Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_640

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9007 and 9008 are separated by 181 nucleotides9008 and 9009 are separated by 122 nucleotides mRNA_639: 9007 - K18027 PTPN3, PTPH1 tyrosine-protein phosphatase non-receptor type 3, at 1,534,937 to 1,536,294 9007 mRNA_640: 9008 - HMMPfam-UV radiation resistance protein and autophagy-related subunit 14-PF10186, at 1,536,476 to 1,538,269 9008 mRNA_641: 9009 - K08333 PIK3R4, VPS15 phosphoinositide-3-kinase, regulatory subunit 4, at 1,538,392 to 1,544,328 9009

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,535,598 + 9007 mRNA_639 0.49 -1.2
1,535,710 - 9007 mRNA_639 0.57 -0.2
1,535,717 - 9007 mRNA_639 0.57 +0.2
1,535,724 + 9007 mRNA_639 0.58 -0.0
1,535,750 - 9007 mRNA_639 0.60 +0.2
1,535,833 - 9007 mRNA_639 0.66 -0.0
1,535,849 + 9007 mRNA_639 0.67 -0.2
1,535,859 - 9007 mRNA_639 0.68 +0.4
1,535,870 + 9007 mRNA_639 0.69 -0.3
1,536,177 - +0.1
1,536,441 - +0.7
1,536,748 - 9008 mRNA_640 0.15 +0.1
1,536,874 - 9008 mRNA_640 0.22 -2.5
1,537,121 - 9008 mRNA_640 0.36 -0.3
1,537,748 - 9008 mRNA_640 0.71 -1.0
1,538,057 - 9008 mRNA_640 0.88 +0.6
1,538,181 - +0.1
1,538,200 + +2.2
1,538,326 + +0.2
1,538,364 + -0.3
1,538,365 + -0.0
1,538,647 - -0.2
1,538,654 + +0.7

Or see this region's nucleotide sequence