Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_691

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9058 and 9059 are separated by 590 nucleotides9059 and 9060 are separated by 640 nucleotides mRNA_690: 9058 - HMMPfam-Tat binding protein 1(TBP-1)-interacting protein (TBPIP)-PF07106, at 1,652,367 to 1,653,596 9058 mRNA_691: 9059 - BLAST gliotoxin biosynthesis protein GliK [Marssonina b..., at 1,654,187 to 1,655,230 9059 mRNA_692: 9060 - K04459 DUSP, MKP dual specificity MAP kinase phosphatase, at 1,655,871 to 1,659,034 9060

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,653,959 - +0.2
1,653,959 + -1.3
1,654,070 - -0.8
1,654,098 + -2.3
1,654,100 - -0.8
1,654,105 + +0.5
1,654,116 + +0.5
1,654,122 - +0.6
1,654,127 - +0.0
1,654,154 - +0.3
1,654,260 + +1.5
1,654,407 + 9059 mRNA_691 0.21 +0.5
1,654,408 - 9059 mRNA_691 0.21 -0.2
1,654,414 - 9059 mRNA_691 0.22 -0.9
1,654,578 - 9059 mRNA_691 0.37 +0.1
1,654,581 + 9059 mRNA_691 0.38 -0.8
1,654,713 - 9059 mRNA_691 0.50 -0.0
1,654,739 - 9059 mRNA_691 0.53 +1.1
1,655,038 + 9059 mRNA_691 0.82 -0.2
1,655,039 + 9059 mRNA_691 0.82 -0.4
1,655,451 - +1.1
1,655,475 + -0.1
1,655,475 + +1.1
1,655,507 + +0.1
1,655,522 - -0.2
1,655,640 + +2.3
1,655,646 - +0.7
1,655,779 - +0.8
1,655,791 - +0.1
1,655,811 + +0.5
1,655,937 - -0.3
1,655,982 - +0.5
1,656,123 + +1.8

Or see this region's nucleotide sequence