Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_736

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9103 and 9104 are separated by 153 nucleotides9104 and 9105 are separated by 309 nucleotides mRNA_735: 9103 - KOG0175 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2, at 1,753,965 to 1,755,090 9103 mRNA_736: 9104 - K00034 gdh glucose 1-dehydrogenase, at 1,755,244 to 1,756,596 9104 mRNA_737: 9105 - HMMPfam-EthD domain-PF07110,SUPERFAMILY--SSF54909,TIGRFAM-TIGR02118 conserved hypothetical protein-TIGR02118, at 1,756,906 to 1,757,418 9105

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,754,311 + 9103 mRNA_735 0.31 -1.5
1,754,450 + 9103 mRNA_735 0.43 -0.2
1,754,489 + 9103 mRNA_735 0.47 -0.1
1,754,587 - 9103 mRNA_735 0.55 +2.3
1,754,720 - 9103 mRNA_735 0.67 +0.9
1,754,751 - 9103 mRNA_735 0.70 -0.3
1,754,831 - 9103 mRNA_735 0.77 +0.1
1,755,560 - 9104 mRNA_736 0.23 -0.2
1,755,592 - 9104 mRNA_736 0.26 +0.5
1,755,984 - 9104 mRNA_736 0.55 +0.5
1,756,316 - 9104 mRNA_736 0.79 +0.6
1,756,409 + 9104 mRNA_736 0.86 +2.4
1,756,755 - -0.6
1,756,803 + +0.8
1,756,809 - -0.8
1,756,821 + +0.6
1,756,824 - -0.8
1,756,853 + +0.5
1,757,372 - +0.2
1,757,377 + +0.0
1,757,378 + +0.0
1,757,521 + +0.1

Or see this region's nucleotide sequence