Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_751

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9118 and 9119 are separated by 117 nucleotides9119 and 9120 are separated by 180 nucleotides mRNA_750: 9118 - K12840 RBM17, SPF45 splicing factor 45, at 1,790,653 to 1,793,277 9118 mRNA_751: 9119 - K19476 IST1 vacuolar protein sorting-associated protein IST1, at 1,793,395 to 1,794,980 9119 mRNA_752: 9120 - K12822 RBM25, S164 RNA-binding protein 25, at 1,795,161 to 1,797,625 9120

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,792,440 + 9118 mRNA_750 0.68 +0.5
1,793,006 + 9118 mRNA_750 0.90 +0.3
1,793,299 - -1.1
1,793,338 + +0.7
1,793,460 - +1.6
1,793,462 - -1.3
1,793,475 - +0.1
1,793,564 - 9119 mRNA_751 0.11 -1.8
1,793,602 + 9119 mRNA_751 0.13 +0.3
1,793,614 + 9119 mRNA_751 0.14 -0.3
1,793,629 + 9119 mRNA_751 0.15 -0.5
1,793,771 + 9119 mRNA_751 0.24 +0.0
1,794,031 + 9119 mRNA_751 0.40 -0.3
1,794,054 - 9119 mRNA_751 0.42 +0.2
1,794,202 + 9119 mRNA_751 0.51 +0.7
1,794,214 + 9119 mRNA_751 0.52 +0.7
1,794,355 - 9119 mRNA_751 0.61 -0.0
1,794,612 - 9119 mRNA_751 0.77 +1.0
1,794,628 - 9119 mRNA_751 0.78 -0.4
1,794,639 - 9119 mRNA_751 0.78 -1.3
1,794,916 + +0.3
1,795,121 + -0.8
1,795,390 - +0.9
1,795,980 - 9120 mRNA_752 0.33 -2.6

Or see this region's nucleotide sequence