Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_796

Experiment: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9163 and 9164 are separated by 385 nucleotides9164 and 9165 are separated by 614 nucleotides mRNA_795: 9163 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1,891,240 to 1,893,546 9163 mRNA_796: 9164 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1,893,932 to 1,897,116 9164 mRNA_797: 9165 - K02265 COX5B cytochrome c oxidase subunit 5b, at 1,897,731 to 1,898,518 9165

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
1,893,133 - 9163 mRNA_795 0.82 +1.1
1,893,153 + 9163 mRNA_795 0.83 -0.1
1,893,280 + 9163 mRNA_795 0.88 +1.0
1,893,292 + 9163 mRNA_795 0.89 -0.2
1,893,444 - +1.9
1,893,449 + +0.3
1,893,465 + +0.5
1,893,476 - -3.6
1,893,477 + -1.0
1,893,573 + +1.3
1,893,576 + -0.7
1,893,576 - +1.6
1,893,576 - -0.9
1,893,592 + -0.4
1,893,593 - +0.2
1,893,594 - +0.4
1,893,605 + -0.2
1,893,606 - +0.5
1,893,651 + +0.7
1,893,662 - -0.0
1,893,666 - +0.2
1,893,671 - -0.5
1,893,694 - +0.1
1,893,709 - +0.4
1,893,724 + +0.7
1,893,726 - -0.1
1,893,735 + -0.1
1,893,739 - -0.2
1,893,745 + -1.1
1,893,748 + +1.0
1,893,750 + +0.8
1,893,757 - -0.0
1,893,758 + +0.2
1,893,761 + +1.7
1,893,763 - +0.4
1,893,764 + -1.2
1,893,765 + -0.6
1,893,765 - -0.9
1,893,773 - -0.2
1,893,780 + +0.8
1,893,784 - -1.7
1,893,810 + -1.0
1,893,873 + +0.5
1,893,889 + -0.6
1,893,890 - -0.5
1,893,892 - -0.0
1,893,917 + -0.9
1,893,919 + -1.8
1,893,920 + -0.2
1,893,926 - -0.6
1,893,942 + +0.4
1,893,954 + +0.6
1,894,005 + +0.3
1,894,043 + -1.1
1,894,055 + +0.5
1,894,083 + +0.2
1,894,091 + +0.5
1,894,205 - -0.8
1,894,252 + 9164 mRNA_796 0.10 -1.6
1,894,479 - 9164 mRNA_796 0.17 -0.4
1,894,502 - 9164 mRNA_796 0.18 +0.4
1,894,970 - 9164 mRNA_796 0.33 +0.6
1,895,258 + 9164 mRNA_796 0.42 +0.7
1,895,815 + 9164 mRNA_796 0.59 -1.8
1,895,817 + 9164 mRNA_796 0.59 +0.5
1,896,722 - 9164 mRNA_796 0.88 +0.6
1,896,830 - -0.3
1,897,130 - +0.3
1,897,132 + -0.4
1,897,160 + -1.4
1,897,265 - -1.6
1,897,292 - +2.2
1,897,404 + +0.3
1,897,405 - +0.8
1,897,416 + -0.1
1,897,427 + +0.8
1,897,432 + +0.1
1,897,436 + -0.2
1,897,437 - +0.7
1,897,445 - +0.8
1,897,448 - +1.0
1,897,465 + +1.3
1,897,495 - +0.2
1,897,588 + +1.4
1,897,596 + -0.0

Or see this region's nucleotide sequence