Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_798

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9165 and 9166 are separated by 437 nucleotides9166 and 9167 are separated by 344 nucleotides mRNA_797: 9165 - K02265 COX5B cytochrome c oxidase subunit 5b, at 1,897,731 to 1,898,518 9165 mRNA_798: 9166 - K15376 GPHN gephyrin, at 1,898,956 to 1,901,377 9166 mRNA_799: 9167 - K01893 NARS, asnS asparaginyl-tRNA synthetase, at 1,901,722 to 1,903,948 9167

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,898,347 - 9165 mRNA_797 0.78 -0.4
1,898,360 - 9165 mRNA_797 0.80 -0.3
1,899,044 + -1.9
1,899,261 + 9166 mRNA_798 0.13 +2.2
1,899,265 - 9166 mRNA_798 0.13 +0.4
1,899,594 - 9166 mRNA_798 0.26 +0.6
1,899,611 + 9166 mRNA_798 0.27 -0.2
1,900,218 + 9166 mRNA_798 0.52 +0.1
1,900,469 + 9166 mRNA_798 0.62 +0.8
1,900,574 - 9166 mRNA_798 0.67 -0.4
1,900,628 - 9166 mRNA_798 0.69 +0.7
1,900,766 + 9166 mRNA_798 0.75 +0.1
1,901,060 - 9166 mRNA_798 0.87 +1.2
1,901,345 + -0.5
1,901,379 + -1.6
1,901,401 - -3.5
1,901,512 + +0.3

Or see this region's nucleotide sequence