Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_817

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9184 and 9185 are separated by 364 nucleotides9185 and 9186 are separated by 158 nucleotides mRNA_816: 9184 - KOG0783 Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains, at 1,943,601 to 1,948,343 9184 mRNA_817: 9185 - K02208 CDK8_11 cyclin-dependent kinase 8/11, at 1,948,708 to 1,950,488 9185 mRNA_818: 9186 - HMMPfam-PQ loop repeat-PF04193, at 1,950,647 to 1,952,582 9186

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,947,803 + 9184 mRNA_816 0.89 +0.9
1,948,188 - +0.3
1,948,288 - -0.1
1,948,292 - -0.1
1,948,550 - +0.8
1,948,565 - +0.6
1,948,706 + +0.7
1,949,025 + 9185 mRNA_817 0.18 +0.6
1,949,464 - 9185 mRNA_817 0.42 +1.0
1,949,579 - 9185 mRNA_817 0.49 +0.9
1,950,009 + 9185 mRNA_817 0.73 +1.8
1,950,352 + +0.6
1,950,612 + +0.4
1,951,205 - 9186 mRNA_818 0.29 -0.5
1,951,254 - 9186 mRNA_818 0.31 +0.3
1,951,486 - 9186 mRNA_818 0.43 +1.3

Or see this region's nucleotide sequence