Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_849

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9216 and 9217 are separated by 173 nucleotides mRNA_848: 9216 - K17989 SDS, SDH, CHA1 L-serine/L-threonine ammonia-lyase, at 2,033,096 to 2,034,366 9216 mRNA_849: 9217 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 2,034,540 to 2,035,724 9217

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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2,034,033 - 9216 mRNA_848 0.74 +0.4
2,034,056 - 9216 mRNA_848 0.76 +0.2
2,034,149 + 9216 mRNA_848 0.83 +0.2
2,034,251 + -0.1
2,034,340 - -0.4
2,034,486 - -0.6
2,034,486 - +0.3
2,034,491 + +0.3
2,034,637 + +2.6
2,034,754 - 9217 mRNA_849 0.18 +1.8
2,035,339 - 9217 mRNA_849 0.67 -0.1
2,035,487 + 9217 mRNA_849 0.80 +2.3
2,035,490 + 9217 mRNA_849 0.80 -0.2
2,035,531 - 9217 mRNA_849 0.84 +2.1
2,035,614 - +0.3
2,035,777 - -0.4
2,035,916 + -1.1
2,035,936 + +0.4
2,035,936 + -0.0
2,035,958 - -0.7
2,035,964 + -0.3
2,036,055 - -0.9
2,036,066 - +2.4
2,036,067 + -0.2
2,036,067 - +2.2
2,036,075 + +0.2
2,036,085 - -0.1
2,036,111 + +0.3
2,036,121 + +0.7
2,036,130 - -0.2
2,036,143 + +0.1
2,036,149 - +1.1
2,036,203 + -0.5
2,036,225 + -0.1
2,036,235 - -1.2
2,036,267 + -0.5
2,036,403 - -0.5
2,036,546 + +0.4
2,036,558 - -0.9
2,036,561 + -0.9
2,036,696 - -0.9
2,036,698 - -0.1
2,036,707 - -0.3
2,036,711 + -0.7
2,036,712 + -0.5

Or see this region's nucleotide sequence