Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_886

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9253 and 9254 are separated by 512 nucleotides mRNA_885: 9253 - K10590 TRIP12 E3 ubiquitin-protein ligase TRIP12, at 2,111,584 to 2,117,077 9253 mRNA_886: 9254 - KOG2504 Monocarboxylate transporter, at 2,117,590 to 2,119,437 9254

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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2,116,759 + +1.3
2,116,967 + +1.0
2,117,071 + -1.4
2,117,094 + +0.6
2,117,285 + +1.0
2,117,312 - +1.0
2,117,328 + -0.5
2,117,362 + +2.4
2,117,377 + +1.2
2,117,387 + +0.4
2,117,387 + -0.4
2,117,391 - +1.4
2,117,395 + -0.5
2,117,396 + +0.8
2,117,409 - -1.6
2,117,415 + -0.1
2,117,509 - -0.1
2,117,549 - +1.6
2,117,586 + -0.1
2,117,592 - +1.1
2,117,594 - +0.8
2,117,608 + +0.5
2,117,609 + +1.0
2,117,691 + -1.3
2,117,708 + +0.6
2,117,716 + +0.1
2,117,830 + 9254 mRNA_886 0.13 +0.3
2,117,908 - 9254 mRNA_886 0.17 -0.3
2,117,917 + 9254 mRNA_886 0.18 +0.8
2,118,589 + 9254 mRNA_886 0.54 -1.2
2,118,975 - 9254 mRNA_886 0.75 +0.2
2,119,261 - -0.2
2,119,303 - -0.4
2,119,424 - +1.5
2,119,447 - +0.4
2,119,470 - +0.4
2,119,560 + -0.6
2,119,732 + +2.1
2,119,812 - -0.2
2,119,821 - -0.9
2,119,838 - +0.3
2,119,847 + -0.7
2,119,899 + +0.7
2,119,899 + -0.1
2,119,904 - +1.6
2,119,904 - +0.3
2,119,907 - +0.9
2,119,916 + -0.0
2,119,916 + +1.0
2,119,917 - +0.8
2,119,930 - +0.1
2,119,937 - +2.6
2,120,033 + +2.3
2,120,038 + -0.9
2,120,040 + +0.4
2,120,046 + -0.0
2,120,056 + +1.9
2,120,058 + +2.1
2,120,066 + +1.7
2,120,088 + +0.1
2,120,188 - -0.2
2,120,199 + -0.5
2,120,200 - +0.0
2,120,202 - +0.5
2,120,207 - +0.3
2,120,223 - -0.3
2,120,230 - +0.9
2,120,351 + +1.4
2,120,356 - +0.8
2,120,387 - +1.7
2,120,407 + +1.4

Or see this region's nucleotide sequence