Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_930

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9298 and 9299 are separated by 237 nucleotides mRNA_930: 9298 - K00861 RFK, FMN1 riboflavin kinase, at 359 to 1,600 9298 mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1,838 to 6,021 9299

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1 + +1.4
1 + -0.2
1 + +1.5
1 + +1.0
1 + +0.2
2 + +0.6
2 + +0.4
5 + +0.4
18 + -0.1
30 + +0.9
37 + -0.1
37 + +1.3
41 + -0.2
42 + -0.5
44 + +0.4
49 + -0.2
49 + +1.7
50 + +0.7
54 + +0.7
58 - +0.6
60 - +0.6
60 + +0.3
60 - -0.7
61 - +1.3
61 + -2.5
63 + +1.8
63 + -0.5
63 + -0.3
63 + +1.6
63 + +1.5
63 + +0.3
64 + +0.7
66 - -0.4
66 + -1.3
70 + +0.7
70 + -0.1
70 - +0.7
71 + -2.4
73 + +0.5
75 - -1.2
77 - -2.1
78 + +0.5
78 - -1.5
78 + -1.1
78 + -1.2
78 + -0.3
78 + -0.0
78 + +0.4
78 + -0.5
78 + -0.4
79 + -0.4
81 - +1.6
81 - +2.7
82 + +0.9
85 + +2.0
104 + +0.8
126 + -0.5
126 + -0.8
128 - +0.9
135 + +0.1
142 + -0.6
150 + +0.6
154 + -0.7
157 + +1.1
171 - -1.3
171 + -1.2
172 + +0.8
172 + +1.3
175 - +1.1
176 - +0.6
177 - +2.7
177 - +0.1
191 - +0.3
192 + +1.5
192 + -0.1
192 + +0.0
193 + +0.6
193 + -1.2
193 + +0.6
198 - -0.4
218 + -0.0
225 + -1.2
235 + +1.5
242 + +1.2
263 - +0.2
293 + +1.1
303 + +0.3
333 - -0.0
339 - -0.3
348 + +1.0
349 + +0.8
377 - +1.2
381 - -0.4
469 + -3.2
487 - 9298 mRNA_930 0.10 -0.2
722 + 9298 mRNA_930 0.29 +0.4
1,641 - +0.1
1,656 - -1.1
1,768 - +0.2
1,778 - +0.9
1,794 + +0.3

Or see this region's nucleotide sequence