Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_963

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9330 and 9331 are separated by 560 nucleotides9331 and 9332 are separated by 810 nucleotides mRNA_962: 9330 - Hypothetical Protein, at 82,973 to 83,563 9330 mRNA_963: 9331 - K15109 SLC25A20_29, CACT, CACL, CRC1 solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29, at 84,124 to 85,910 9331 mRNA_964: 9332 - Hypothetical Protein, at 86,721 to 89,416 9332

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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83,202 + 9330 mRNA_962 0.39 +0.8
83,218 + 9330 mRNA_962 0.41 -0.9
83,218 - 9330 mRNA_962 0.41 +0.3
83,225 + 9330 mRNA_962 0.43 +1.6
83,225 + 9330 mRNA_962 0.43 +1.0
83,373 + 9330 mRNA_962 0.68 +1.3
83,388 + 9330 mRNA_962 0.70 -0.1
83,394 + 9330 mRNA_962 0.71 -0.9
83,506 - -0.4
83,515 - -0.1
83,659 + -0.5
83,676 + +1.4
83,678 - +0.2
83,685 + +1.1
83,731 + +2.1
83,733 - +0.8
83,738 + +0.7
83,738 - +0.8
83,741 + +0.5
83,746 - +0.5
83,753 - -0.2
83,753 - +2.3
83,769 + +2.2
83,769 - -0.4
83,769 - -1.6
83,772 - -0.9
83,776 + +0.2
83,806 - -0.6
83,814 + +2.0
83,814 - +0.8
83,818 - -1.1
83,833 + -1.4
83,846 + -0.8
83,857 - +0.1
83,865 + +0.5
83,878 + +1.3
83,948 + +0.4
83,968 + +0.0
84,094 + +0.2
84,110 - +0.3
84,118 - -0.0
84,832 + 9331 mRNA_963 0.40 -0.1
85,271 + 9331 mRNA_963 0.64 +0.2
85,392 + 9331 mRNA_963 0.71 -1.1
85,857 - -1.8
85,974 - +0.6
85,975 + +0.1
85,986 + -0.8
85,991 - -1.0
86,007 + +1.9
86,013 + +0.2
86,013 + +0.4
86,019 + +0.4
86,022 + +1.2
86,073 - +2.0
86,083 - +0.0
86,089 - -0.5
86,090 + +0.4
86,094 + -0.0
86,095 + +0.4
86,097 + +0.5
86,104 - -0.3
86,108 + +0.5
86,119 + +1.2
86,124 - +0.2
86,130 + +0.7
86,132 + +1.8
86,133 + +2.1
86,138 - -0.3
86,140 - +0.5
86,266 + -0.9
86,420 + -0.0
86,477 + -0.4
86,595 + +1.8
86,661 + +0.2
86,881 + +0.4

Or see this region's nucleotide sequence