Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1029

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9396 and 9397 are separated by 37 nucleotides9397 and 9398 are separated by 411 nucleotides mRNA_1028: 9396 - HMMPfam-Domain of unknown function (DUF2411)-PF10304,SUPERFAMILY--SSF48371, at 236,228 to 240,194 9396 mRNA_1029: 9397 - SMART-N-terminal domain of CBF1 interacting co-repressor CIR-SM01083, at 240,232 to 241,544 9397 mRNA_1030: 9398 - Hypothetical Protein, at 241,956 to 242,588 9398

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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239,470 - 9396 mRNA_1028 0.82 -1.3
240,729 - 9397 mRNA_1029 0.38 -0.7
240,740 + 9397 mRNA_1029 0.39 -0.6
241,178 + 9397 mRNA_1029 0.72 +0.6
241,601 - +0.9
241,609 + +0.2
241,740 - +0.1
241,929 + -0.8
242,031 - 9398 mRNA_1030 0.12 +2.5
242,077 - 9398 mRNA_1030 0.19 +0.7
242,080 - 9398 mRNA_1030 0.20 +0.5
242,162 - 9398 mRNA_1030 0.33 +0.1
242,348 - 9398 mRNA_1030 0.62 +0.6
242,355 - 9398 mRNA_1030 0.63 +0.2

Or see this region's nucleotide sequence