Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1033

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9400 and 9401 are separated by 103 nucleotides9401 and 9402 are separated by 37 nucleotides mRNA_1032: 9400 - Hypothetical Protein, at 245,028 to 245,336 9400 mRNA_1033: 9401 - KOG4653 Uncharacterized conserved protein, at 245,440 to 249,406 9401 mRNA_1034: 9402 - SMART-N-terminal domain of CBF1 interacting co-repressor CIR-SM01083, at 249,444 to 250,770 9402

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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244,470 + +0.5
244,515 + +1.0
244,528 - +1.6
244,541 - -0.2
244,543 - +2.3
244,847 + -0.9
244,987 + +0.1
244,992 + +0.3
244,994 + -0.6
244,995 - +0.3
245,246 - 9400 mRNA_1032 0.71 +0.4
245,264 - 9400 mRNA_1032 0.76 -0.9
245,287 - 9400 mRNA_1032 0.84 +2.6
245,312 + -0.4
245,385 + +1.0
245,403 - +0.5
245,432 + +1.1
245,433 - +0.1
245,433 - +2.0
245,440 + +0.3
247,301 + 9401 mRNA_1033 0.47 -1.0
247,894 + 9401 mRNA_1033 0.62 -1.3
248,116 - 9401 mRNA_1033 0.67 +0.2
250,187 - 9402 mRNA_1034 0.56 -0.7
250,244 + 9402 mRNA_1034 0.60 +1.2

Or see this region's nucleotide sequence