Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1063

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9430 and 9431 are separated by 622 nucleotides9431 and 9432 are separated by 412 nucleotides mRNA_1062: 9430 - K10742 DNA2 DNA replication ATP-dependent helicase Dna2, at 311,379 to 314,968 9430 mRNA_1063: 9431 - BLAST DNA replication ATP-dependent helicase Dna2 [Rhod..., at 315,591 to 316,093 9431 mRNA_1064: 9432 - K05533 ANP1 mannan polymerase II complex ANP1 subunit, at 316,506 to 317,869 9432

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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314,610 + +0.9
314,611 - +0.7
314,716 + -1.1
314,833 + +1.6
314,883 - +1.0
314,890 + +0.6
315,026 + +0.7
315,036 + +0.6
315,120 + +1.0
315,148 + +0.2
315,255 - -0.0
315,290 - +1.2
315,416 + +0.4
315,448 + +0.3
315,557 + +0.7
315,702 - 9431 mRNA_1063 0.22 +0.1
315,705 + 9431 mRNA_1063 0.23 -3.1
315,855 - 9431 mRNA_1063 0.52 -2.3
315,881 + 9431 mRNA_1063 0.58 -1.2
316,015 + 9431 mRNA_1063 0.84 -0.4
316,018 - 9431 mRNA_1063 0.85 +0.7
316,031 + 9431 mRNA_1063 0.87 -1.2
316,063 + +0.3
316,065 - +0.4
316,177 - +1.1
316,201 - +0.6
316,237 + +0.4
316,354 - -0.8
316,362 + +0.7
316,480 - -0.6
316,509 + -0.2
316,632 - -0.9
316,795 + 9432 mRNA_1064 0.21 +0.6

Or see this region's nucleotide sequence