Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1096

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9463 and 9464 are separated by 80 nucleotides mRNA_1095: 9463 - KOG2741 Dimeric dihydrodiol dehydrogenase, at 395,816 to 397,150 9463 mRNA_1096: 9464 - KOG1611 Predicted short chain-type dehydrogenase, at 397,231 to 398,090 9464

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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396,539 - 9463 mRNA_1095 0.54 -0.6
396,955 - 9463 mRNA_1095 0.85 -0.2
397,100 + +1.5
397,134 - -0.5
397,290 + +0.6
397,510 - 9464 mRNA_1096 0.32 -0.2
397,788 + 9464 mRNA_1096 0.65 +1.0
397,992 + 9464 mRNA_1096 0.88 -0.7
398,220 + -0.6
398,254 - -0.3
398,260 - -0.2
398,302 + +0.5
398,386 - -0.7
398,406 - -0.6
398,559 - +1.5
398,565 - -1.1
398,699 + +1.4
398,706 - -2.0
398,707 - +0.1
398,709 - -0.3
398,715 - +0.5
398,718 - -0.4
398,726 - -1.1
398,734 + +1.5
398,864 - -0.5
398,870 - -0.1
398,902 + +0.5
398,912 + +0.3
399,011 + +0.3

Or see this region's nucleotide sequence