Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1245

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9612 and 9613 are separated by 401 nucleotides9613 and 9614 are separated by 52 nucleotides mRNA_1244: 9612 - SUPERFAMILY--SSF52047, at 739,687 to 741,319 9612 mRNA_1245: 9613 - HMMPfam-Magnesium transporter NIPA-PF05653,SUPERFAMILY--SSF103481, at 741,721 to 743,435 9613 mRNA_1246: 9614 - SUPERFAMILY--SSF52047, at 743,488 to 744,876 9614

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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740,906 + 9612 mRNA_1244 0.75 +0.0
741,093 - 9612 mRNA_1244 0.86 +1.8
741,258 + +1.5
741,354 + +4.0
741,529 + -1.0
741,636 - +0.6
741,654 - +2.0
741,660 - -0.5
741,948 - 9613 mRNA_1245 0.13 -0.4
742,513 + 9613 mRNA_1245 0.46 -0.2
742,646 + 9613 mRNA_1245 0.54 -0.6
742,835 + 9613 mRNA_1245 0.65 -0.4
743,305 + +0.6
744,164 - 9614 mRNA_1246 0.49 -0.5
744,245 - 9614 mRNA_1246 0.54 -0.9
744,375 + 9614 mRNA_1246 0.64 +2.7

Or see this region's nucleotide sequence