Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1267

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9634 and 9635 are separated by 502 nucleotides9635 and 9636 are separated by 364 nucleotides mRNA_1266: 9634 - K00004 BDH, butB (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase, at 791,102 to 792,635 9634 mRNA_1267: 9635 - K00814 GPT, ALT alanine transaminase, at 793,138 to 795,041 9635 mRNA_1268: 9636 - K03790 rimJ ribosomal-protein-alanine N-acetyltransferase, at 795,406 to 796,307 9636

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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792,352 - 9634 mRNA_1266 0.81 +0.2
792,640 + +0.2
792,755 - +0.3
792,761 - +0.6
792,762 - +1.5
792,789 - -0.2
792,789 + +0.2
792,808 - +1.3
792,844 + +0.8
792,846 + +0.8
792,846 + -0.1
792,910 + -0.2
792,943 - +0.4
792,997 + +0.8
793,028 - -2.5
793,032 - -0.9
793,055 - +0.2
793,058 - -0.5
793,065 + +0.3
793,072 - +0.4
793,075 - -0.1
793,084 + +0.6
793,165 + -0.1
793,167 - +0.7
793,218 + -2.1
793,223 - -1.8
793,351 - 9635 mRNA_1267 0.11 -3.6
793,354 + 9635 mRNA_1267 0.11 -4.0
793,370 - 9635 mRNA_1267 0.12 -1.7
793,373 + 9635 mRNA_1267 0.12 -1.8
793,500 - 9635 mRNA_1267 0.19 -1.9
793,507 + 9635 mRNA_1267 0.19 -2.1
793,521 - 9635 mRNA_1267 0.20 -2.3
793,649 - 9635 mRNA_1267 0.27 -3.0
794,072 - 9635 mRNA_1267 0.49 +0.3
794,239 + 9635 mRNA_1267 0.58 -2.2
794,346 + 9635 mRNA_1267 0.63 -1.0
794,379 - 9635 mRNA_1267 0.65 +0.0
794,503 + 9635 mRNA_1267 0.72 -2.7
794,534 + 9635 mRNA_1267 0.73 -2.2
794,652 - 9635 mRNA_1267 0.80 -1.1
794,860 + -2.2
795,071 + +1.5
795,075 + +1.0
795,102 + -0.2
795,113 + +0.7
795,122 - -0.2
795,130 + +0.9
795,131 - +0.1
795,144 - -0.3
795,229 + +0.2
795,232 - +0.3
795,257 - +1.2
795,274 + +0.9
795,332 - +3.1
795,351 + -1.1
795,446 - +0.2
795,467 + +1.4
795,563 - 9636 mRNA_1268 0.17 +1.2
795,874 - 9636 mRNA_1268 0.52 +0.5
795,916 - 9636 mRNA_1268 0.57 +0.9
795,984 + 9636 mRNA_1268 0.64 -0.2
796,039 + 9636 mRNA_1268 0.70 -0.3

Or see this region's nucleotide sequence