Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1346

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9713 and 9714 are separated by 265 nucleotides mRNA_1345: 9713 - KOG2533 Permease of the major facilitator superfamily, at 47,713 to 50,221 9713 mRNA_1346: 9714 - Hypothetical Protein, at 50,487 to 51,327 9714

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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49,489 + 9713 mRNA_1345 0.71 +0.5
49,497 - 9713 mRNA_1345 0.71 -0.2
49,516 + 9713 mRNA_1345 0.72 -1.2
49,602 - 9713 mRNA_1345 0.75 -0.8
49,648 - 9713 mRNA_1345 0.77 -0.8
49,818 - 9713 mRNA_1345 0.84 +0.3
49,820 + 9713 mRNA_1345 0.84 -0.6
49,921 - 9713 mRNA_1345 0.88 -0.1
49,962 - 9713 mRNA_1345 0.90 -0.0
50,203 + -1.9
50,239 + +1.0
50,432 + -1.5
50,481 + +0.5
50,484 - +0.2
50,517 + -0.4
50,688 + 9714 mRNA_1346 0.24 -0.3
50,711 + 9714 mRNA_1346 0.27 -0.2
50,725 + 9714 mRNA_1346 0.28 +2.6
50,821 - 9714 mRNA_1346 0.40 +0.8
50,856 + 9714 mRNA_1346 0.44 -1.8
51,021 - 9714 mRNA_1346 0.63 +0.2
51,118 + 9714 mRNA_1346 0.75 -0.7
51,324 - +0.0
51,363 - -1.2
51,697 - -0.2
51,856 - -1.7
51,871 - +1.8
51,877 + +0.3
51,886 + +0.1
52,002 - +0.2
52,018 + +0.0

Or see this region's nucleotide sequence