Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1351

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9718 and 9719 are separated by 440 nucleotides9719 and 9720 are separated by 560 nucleotides mRNA_1350: 9718 - KOG3376 Uncharacterized conserved protein, at 60,182 to 60,785 9718 mRNA_1351: 9719 - Hypothetical Protein, at 61,226 to 65,910 9719 mRNA_1352: 9720 - Hypothetical Protein, at 66,471 to 67,100 9720

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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60,317 + 9718 mRNA_1350 0.22 -0.2
60,319 + 9718 mRNA_1350 0.23 -0.1
60,452 - 9718 mRNA_1350 0.45 +0.9
60,892 + +1.7
61,038 - +0.5
61,050 + +2.1
61,054 + +0.8
61,150 + -0.9
61,209 + -0.3
61,304 + -1.1
61,334 - -0.1
61,404 - +0.4
61,458 - +2.4
61,480 - +0.4
61,493 + +1.8
61,772 - 9719 mRNA_1351 0.12 +1.5
61,796 - 9719 mRNA_1351 0.12 -2.0
61,943 + 9719 mRNA_1351 0.15 +0.6
61,953 + 9719 mRNA_1351 0.16 +0.5
61,989 - 9719 mRNA_1351 0.16 +2.2
62,249 - 9719 mRNA_1351 0.22 +0.5
62,402 + 9719 mRNA_1351 0.25 +1.0
62,499 - 9719 mRNA_1351 0.27 +0.8
62,630 + 9719 mRNA_1351 0.30 +0.3
62,710 + 9719 mRNA_1351 0.32 +1.0
62,711 + 9719 mRNA_1351 0.32 +1.7
62,721 - 9719 mRNA_1351 0.32 +1.1
62,777 + 9719 mRNA_1351 0.33 +1.0
62,826 + 9719 mRNA_1351 0.34 +0.5
63,009 + 9719 mRNA_1351 0.38 +0.9
63,874 + 9719 mRNA_1351 0.57 +1.4
64,009 - 9719 mRNA_1351 0.59 +0.5
64,137 + 9719 mRNA_1351 0.62 +0.3
64,157 + 9719 mRNA_1351 0.63 +0.2
64,185 - 9719 mRNA_1351 0.63 -0.6
64,269 - 9719 mRNA_1351 0.65 +0.0
64,320 + 9719 mRNA_1351 0.66 -0.0
64,385 + 9719 mRNA_1351 0.67 -0.8
64,443 + 9719 mRNA_1351 0.69 +1.6
64,581 - 9719 mRNA_1351 0.72 +0.7
64,693 - 9719 mRNA_1351 0.74 +0.4
64,761 - 9719 mRNA_1351 0.75 -0.2
64,869 - 9719 mRNA_1351 0.78 +0.1
64,905 - 9719 mRNA_1351 0.79 -0.1
64,956 - 9719 mRNA_1351 0.80 +0.0
64,966 + 9719 mRNA_1351 0.80 +1.0
65,138 - 9719 mRNA_1351 0.84 +0.8
65,360 + 9719 mRNA_1351 0.88 -0.7
65,363 + 9719 mRNA_1351 0.88 -0.2
65,468 - +0.5
65,471 + +0.5
65,500 + +0.7
65,540 - +1.7
65,575 - -1.4
65,600 + +0.6
65,606 + +0.3
65,720 - +0.6
65,839 + +0.4
65,953 - -0.3
66,035 + +0.1
66,064 + -1.0
66,505 - -0.2
66,526 - +0.7
66,532 + -0.4
66,532 + +1.4
66,532 + -1.1
66,644 - 9720 mRNA_1352 0.27 -0.7
66,779 + 9720 mRNA_1352 0.49 +0.1
66,783 - 9720 mRNA_1352 0.50 -1.1
66,874 - 9720 mRNA_1352 0.64 +0.9

Or see this region's nucleotide sequence