Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1361

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9728 and 9729 are separated by 613 nucleotides9729 and 9730 are separated by 935 nucleotides mRNA_1360: 9728 - K01054 MGLL acylglycerol lipase, at 88,622 to 90,157 9728 mRNA_1361: 9729 - Hypothetical Protein, at 90,771 to 91,579 9729 mRNA_1362: 9730 - K00507 SCD, desC stearoyl-CoA desaturase (Delta-9 desaturase), at 92,515 to 94,818 9730

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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89,965 + 9728 mRNA_1360 0.87 -0.3
90,038 + -0.5
90,068 + +0.3
90,145 - -2.3
90,242 - +0.1
90,326 - +1.9
90,328 + -0.7
90,335 - -0.1
90,349 + -1.0
90,350 + +0.2
90,356 + +0.8
90,364 + -0.0
90,374 + -0.4
90,376 - +0.8
90,378 - +0.5
90,532 - +0.6
90,534 - +2.3
90,556 + +2.1
90,568 + +0.5
90,606 - -0.3
90,696 + -2.0
90,709 + +0.9
90,822 - +1.1
90,901 - 9729 mRNA_1361 0.16 +0.7
91,118 - 9729 mRNA_1361 0.43 +0.4
91,123 - 9729 mRNA_1361 0.44 +0.2
91,268 + 9729 mRNA_1361 0.61 +0.7
91,334 + 9729 mRNA_1361 0.70 +0.4
91,554 - +0.4
91,689 + -0.2
91,699 + +0.6
91,714 + +0.6
91,818 - +1.5
91,935 - +0.6
91,935 - +1.6
91,938 + +0.3
91,959 - -0.9
91,978 - +0.4
92,007 + +2.0
92,008 + -0.5
92,008 + -1.8
92,010 + -0.5
92,027 + +0.6
92,058 - +0.7
92,090 - -0.2
92,094 + -1.3
92,105 - -0.9
92,128 + -1.5
92,131 - +2.1
92,142 - +0.4
92,143 + -0.4
92,155 + +0.1
92,162 - +0.6
92,176 - -0.6
92,206 + +1.5
92,212 + -2.3
92,212 - +0.3
92,221 - +1.3
92,255 - -2.0
92,270 - +1.5
92,272 - +1.4
92,282 - +0.9
92,285 + -0.2
92,291 + +0.8
92,295 - -1.6
92,302 - +0.7
92,308 + -1.8

Or see this region's nucleotide sequence