Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1422

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9789 and 9790 are separated by 594 nucleotides9790 and 9791 are separated by 460 nucleotides mRNA_1421: 9789 - K06950 K06950 uncharacterized protein, at 239,485 to 240,342 9789 mRNA_1422: 9790 - K12236 NFX1 transcriptional repressor NF-X1, at 240,937 to 244,730 9790 mRNA_1423: 9791 - Hypothetical Protein, at 245,191 to 249,551 9791

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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239,956 + 9789 mRNA_1421 0.55 -3.5
240,092 + 9789 mRNA_1421 0.71 -2.4
240,093 - 9789 mRNA_1421 0.71 -0.4
240,669 - +0.4
240,814 - +0.3
240,820 - +0.0
240,821 - -0.7
240,823 - +1.2
240,823 + +0.1
240,823 - +0.3
240,826 + +0.1
240,830 + +0.4
240,832 + +0.3
240,834 + +0.1
240,835 + -0.2
240,846 + -1.8
240,852 - -0.9
240,853 - -0.5
240,853 + +0.1
240,853 - -0.3
240,854 + -1.5
240,857 + +0.7
240,858 - +0.4
240,863 + -0.2
240,865 + +1.9
240,870 + +0.0
240,875 - -0.1
240,876 + +0.7
240,878 - -0.8
240,887 + -0.5
240,971 - -0.3
241,007 + -0.2
241,143 + +0.3
241,167 + +1.4
241,631 + 9790 mRNA_1422 0.18 +2.2
241,764 + 9790 mRNA_1422 0.22 +1.1
242,175 + 9790 mRNA_1422 0.33 +0.1
242,278 - 9790 mRNA_1422 0.35 +0.9
242,329 + 9790 mRNA_1422 0.37 +0.1
242,458 + 9790 mRNA_1422 0.40 -1.3
242,945 + 9790 mRNA_1422 0.53 +0.0
243,044 - 9790 mRNA_1422 0.56 +0.3
243,209 + 9790 mRNA_1422 0.60 +0.6
243,369 + 9790 mRNA_1422 0.64 +0.3
244,080 - 9790 mRNA_1422 0.83 +0.4
244,102 - 9790 mRNA_1422 0.83 +0.7
244,174 - 9790 mRNA_1422 0.85 -2.7
244,266 - 9790 mRNA_1422 0.88 -0.8
244,267 + 9790 mRNA_1422 0.88 +1.3
244,413 + +0.1
244,529 - +0.6
244,607 + +0.4
244,712 - -0.4
244,717 + -1.3
244,842 + -1.1
244,848 - +0.5
244,901 - +1.2
244,957 - -0.6
244,993 - -0.1
245,004 - -0.3
245,011 + +2.2
245,154 - -1.2
245,496 + -1.5
245,685 - 9791 mRNA_1423 0.11 -0.6

Or see this region's nucleotide sequence