Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1427

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9794 and 9795 are separated by 283 nucleotides9795 and 9796 are separated by 782 nucleotides mRNA_1426: 9794 - Hypothetical Protein, at 257,287 to 258,707 9794 mRNA_1427: 9795 - Hypothetical Protein, at 258,991 to 261,200 9795 mRNA_1428: 9796 - HMMPfam-Protein of unknown function (DUF3237)-PF11578, at 261,983 to 262,469 9796

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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258,123 + 9794 mRNA_1426 0.59 +1.6
258,235 - 9794 mRNA_1426 0.67 -0.3
258,332 - 9794 mRNA_1426 0.74 -0.9
258,775 - -0.9
258,916 + +0.3
261,164 + -0.0
261,314 - +0.5
261,333 - +1.5
261,380 + +0.4
261,534 - -0.2
261,793 + -0.1
262,035 - 9796 mRNA_1428 0.11 +0.1

Or see this region's nucleotide sequence