Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1444

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9812 and 9813 are separated by 138 nucleotides mRNA_1444: 9812 - KOG4173 Alpha-SNAP protein, at 294,219 to 295,156 9812 mRNA_1445: 9813 - K20045 ITSN intersectin, at 295,295 to 301,799 9813

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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293,270 + +0.7
293,273 - -0.8
293,279 - +2.2
293,282 - -0.3
293,289 - +0.7
293,289 - +0.1
293,289 - +0.6
293,292 + +1.3
293,293 + -3.0
293,307 + +2.4
293,315 - +0.5
293,316 + +0.7
293,321 + +0.9
293,324 + +0.5
293,326 - +0.9
293,450 - +2.0
293,704 - +0.4
294,007 + +1.3
294,008 - +1.1
294,019 + -0.1
294,163 - -0.3
294,174 + -0.1
294,183 + -1.3
294,204 + +0.6
294,320 - 9812 mRNA_1444 0.11 -0.1
294,323 - 9812 mRNA_1444 0.11 +1.6
294,485 + 9812 mRNA_1444 0.28 +0.4
294,601 - 9812 mRNA_1444 0.41 +1.3
294,743 - 9812 mRNA_1444 0.56 +0.6
294,744 - 9812 mRNA_1444 0.56 +1.9
294,907 - 9812 mRNA_1444 0.73 +0.5
295,199 - -0.9
295,613 - +0.0
295,619 - -0.2
295,909 - +0.0
295,931 - +0.0
295,948 - 9813 mRNA_1445 0.10 +2.0
295,948 - 9813 mRNA_1445 0.10 +0.2

Or see this region's nucleotide sequence