Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1471

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9838 and 9839 are separated by 253 nucleotides9839 and 9840 are separated by 475 nucleotides mRNA_1470: 9838 - K18592 GGT1_5, CD224 gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase, at 368,201 to 370,453 9838 mRNA_1471: 9839 - K08874 TRRAP transformation/transcription domain-associated protein, at 370,707 to 382,935 9839 mRNA_1472: 9840 - HMMPfam-Zinc finger, C3HC4 type (RING finger)-PF00097,ProSitePatterns-Zinc finger RING-type signature.-PS00518,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 383,411 to 384,622 9840

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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370,035 - 9838 mRNA_1470 0.81 -0.5
370,684 - +0.3
380,464 - 9839 mRNA_1471 0.80 +0.6
383,011 - -1.2
383,012 - +0.5
383,012 - +1.6
383,012 - -0.8
383,013 - -1.8
383,017 + -3.0
383,021 + -0.4
383,022 - +0.5
383,038 + +1.5
383,038 - +2.4
383,045 - -0.1
383,047 + -3.8
383,057 + -0.3
383,196 - +0.6
383,357 - +0.9
383,372 - -0.3
383,796 + 9840 mRNA_1472 0.32 +0.0

Or see this region's nucleotide sequence