Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1499

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9866 and 9867 are separated by 468 nucleotides9867 and 9868 are separated by 699 nucleotides mRNA_1498: 9866 - K11129 NHP2, NOLA2 H/ACA ribonucleoprotein complex subunit 2, at 454,122 to 455,195 9866 mRNA_1499: 9867 - KOG1231 Proteins containing the FAD binding domain, at 455,664 to 457,570 9867 mRNA_1500: 9868 - K05770 TSPO, BZRP benzodiazapine receptor, at 458,270 to 459,039 9868

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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455,264 - +1.0
455,357 - +1.1
455,401 - +0.4
455,402 - +0.2
455,405 + +0.2
455,411 - -0.3
455,414 - +0.7
455,415 - +0.1
455,420 + -1.0
455,420 + +0.8
455,424 + +1.3
455,427 - +0.3
455,429 - +0.8
455,442 + +1.2
455,447 - +0.1
455,475 - -0.4
455,509 + -0.2
455,528 - +0.3
455,532 + +0.9
455,556 - +0.7
455,559 - +0.0
455,565 - -0.1
455,574 - +0.3
455,578 - +0.0
455,578 + +0.3
455,578 - +1.4
455,633 - -0.0
455,707 - -0.6
455,709 + +0.3
455,866 - 9867 mRNA_1499 0.11 +0.4
455,872 - 9867 mRNA_1499 0.11 -0.9
455,874 + 9867 mRNA_1499 0.11 +0.7
455,893 + 9867 mRNA_1499 0.12 +0.1
455,927 - 9867 mRNA_1499 0.14 +0.4
456,053 + 9867 mRNA_1499 0.20 -0.4
456,131 - 9867 mRNA_1499 0.24 -0.5
456,347 + 9867 mRNA_1499 0.36 +0.3
456,563 + 9867 mRNA_1499 0.47 -0.6
456,629 + 9867 mRNA_1499 0.51 -1.6
456,732 + 9867 mRNA_1499 0.56 +0.0
456,888 + 9867 mRNA_1499 0.64 -1.3
457,385 - +0.1
457,454 + -0.4
457,456 - +1.0
457,456 - -1.4
457,699 - +2.5
457,732 - -0.0
457,796 - -0.1
457,804 - +1.4
457,807 + +0.8
457,834 - -0.3
457,836 - +1.2
457,843 - +1.6
457,887 + +0.2
457,889 + -0.8
457,896 - +0.6
457,898 - +0.0
457,916 - -0.9
457,922 - -1.6
457,938 - +0.4
458,033 - -1.1
458,046 + +0.5
458,061 + -0.1
458,062 - +0.4
458,151 - -1.2
458,176 + +0.5
458,319 + +0.4
458,335 - -1.0

Or see this region's nucleotide sequence