Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1517

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9884 and 9885 are separated by 882 nucleotides9885 and 9886 are separated by 624 nucleotides mRNA_1516: 9884 - BLAST transmembrane ATP-binding protein ABC transporter [Rh..., at 492,148 to 493,899 9884 mRNA_1517: 9885 - HMMPfam-Alternative oxidase-PF01786,PIRSF--PIRSF005229, at 494,782 to 496,298 9885 mRNA_1518: 9886 - K03521 fixA, etfB electron transfer flavoprotein beta subunit, at 496,923 to 498,027 9886

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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493,826 - -0.9
493,853 + -0.1
493,863 + -0.7
493,867 + -0.0
493,908 - -0.3
493,923 - +0.9
493,926 + +1.0
493,939 - -0.4
493,943 - -0.2
493,951 - +1.4
493,977 - -0.1
494,022 + +1.3
494,025 + +0.4
494,033 + -1.0
494,033 - -0.6
494,037 + +0.1
494,039 - +1.0
494,054 - +1.8
494,060 + -0.0
494,112 - -0.7
494,114 - +0.3
494,115 + +1.5
494,120 - -1.4
494,124 + -2.1
494,127 + -0.1
494,131 + -0.7
494,132 - -0.1
494,163 - -0.4
494,169 + +0.3
494,184 + +1.2
494,195 - -0.5
494,204 + -0.6
494,204 - +0.6
494,214 + +0.8
494,214 - +0.5
494,219 + +0.1
494,219 + +1.5
494,229 + +1.0
494,240 + -0.9
494,240 + +0.2
494,241 + +0.2
494,261 + +1.7
494,271 - +1.1
494,271 - -1.1
494,277 + -0.1
494,286 - +0.7
494,287 - -0.5
494,289 - -0.3
494,291 + -0.2
494,292 + -0.1
494,311 - +2.2
494,311 - +2.7
494,318 + +0.3
494,318 + +0.1
494,321 + -0.0
494,321 + +0.4
494,323 - +1.3
494,325 - -0.6
494,326 - +0.2
494,330 - +0.2
494,330 + +0.6
494,332 + -0.5
494,335 + -0.4
494,343 + +0.3
494,390 + +1.6
494,431 + +0.1
494,450 + +2.9
494,473 + -0.8
494,475 + -0.0
494,530 + +0.6
494,572 + +0.2
494,583 + +0.6
494,594 + +2.6
494,625 - -0.4
494,626 + -0.4
494,654 - +0.6
494,658 + +0.2
494,687 - +1.4
494,740 - -0.8
494,791 + +0.2
494,823 + -0.5
494,880 + +0.1
494,901 - +1.0
494,919 - +0.2
494,967 + 9885 mRNA_1517 0.12 -0.5
494,981 - 9885 mRNA_1517 0.13 +0.3
495,002 + 9885 mRNA_1517 0.15 -0.7
495,006 + 9885 mRNA_1517 0.15 -0.3
495,054 - 9885 mRNA_1517 0.18 +1.9
495,125 + 9885 mRNA_1517 0.23 +0.3
495,151 - 9885 mRNA_1517 0.24 -0.7
495,156 + 9885 mRNA_1517 0.25 -0.2
495,216 - 9885 mRNA_1517 0.29 +0.5
495,216 - 9885 mRNA_1517 0.29 +0.6
495,356 - 9885 mRNA_1517 0.38 +0.2
495,470 + 9885 mRNA_1517 0.45 +0.7
495,479 + 9885 mRNA_1517 0.46 -1.3
496,039 - 9885 mRNA_1517 0.83 +1.5
496,039 - 9885 mRNA_1517 0.83 +0.1
496,317 + +0.1
496,346 - +0.0
496,400 - +0.2
496,466 + +0.4
496,476 + +1.1
496,488 + -0.2
496,556 + -1.3
496,578 - +0.5
496,595 + +0.6
496,596 + -2.8
496,606 + +0.3
496,613 + +1.0
496,652 - -2.6
496,690 + -0.8
496,691 + +0.3
496,696 + -0.4
496,696 + -3.1
496,699 - +0.2
496,716 - +0.5
496,753 - +0.2
496,772 - +2.1
496,772 - -0.3
496,772 - +1.2
496,782 + +0.1
496,785 - -2.0
496,787 + +0.5
496,789 + +0.7
496,795 + -0.4
496,799 + -0.2
496,799 + -2.1
496,806 + +0.2
496,823 + -0.0
496,909 + -0.5
497,184 + 9886 mRNA_1518 0.24 -0.0

Or see this region's nucleotide sequence