Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1592

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9959 and 9960 are separated by 550 nucleotides mRNA_1591: 9959 - K01835 pgm phosphoglucomutase, at 673,406 to 675,711 9959 mRNA_1592: 9960 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 676,262 to 677,615 9960

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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675,268 + 9959 mRNA_1591 0.81 -0.0
675,678 + -0.0
675,821 - -0.6
675,829 - -0.5
675,847 - -1.6
675,901 + +0.0
675,995 + -0.4
676,002 + +0.9
676,003 - +2.5
676,016 + +0.3
676,115 - +1.6
676,116 - +0.4
676,120 - +0.6
676,135 - -1.3
676,909 - 9960 mRNA_1592 0.48 -0.4
676,913 + 9960 mRNA_1592 0.48 -0.3
676,926 + 9960 mRNA_1592 0.49 +0.4
677,074 + 9960 mRNA_1592 0.60 +1.1
677,086 + 9960 mRNA_1592 0.61 +0.4
677,323 + 9960 mRNA_1592 0.78 -1.4
677,801 + +0.1
678,370 - +0.8
678,513 + -0.1
678,535 - +0.4
678,541 + -0.3
678,550 - +0.1
678,560 + +0.1
678,571 - +0.6
678,583 + +0.7
678,588 + +0.4

Or see this region's nucleotide sequence