Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1593

Experiment: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_1593: 9961 - KOG4366 Predicted thioesterase, at 678,647 to 679,781 9961

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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677,801 + +0.1
678,370 - +0.8
678,513 + -0.1
678,535 - +0.4
678,541 + -0.3
678,550 - +0.1
678,560 + +0.1
678,571 - +0.6
678,583 + +0.7
678,588 + +0.4
678,706 + +0.5
678,712 + +2.0
678,726 + +2.2
678,726 + -0.1
678,732 + +0.1
678,732 + +0.6
678,790 + 9961 mRNA_1593 0.13 -0.3
678,879 + 9961 mRNA_1593 0.20 -0.5
679,017 + 9961 mRNA_1593 0.33 +0.5
679,321 + 9961 mRNA_1593 0.59 +0.2
679,456 - 9961 mRNA_1593 0.71 +0.3
679,765 + -0.0
679,770 - +0.1
679,772 + +0.6
679,776 + +0.8
679,864 - +1.4
679,874 - -1.0
679,944 + -0.7
679,977 - +0.2
680,012 - +1.6
680,013 + +1.3
680,015 + -0.9
680,026 + +1.3
680,033 - +0.9
680,033 - +0.5
680,038 + +0.0
680,041 + -0.5
680,045 - +0.4
680,048 - +0.1
680,052 + +0.6
680,064 + -0.8
680,126 + +0.7
680,136 - -0.6
680,136 - -0.5
680,137 + -0.1
680,137 - -0.1
680,147 + +0.7
680,208 - -1.7
680,245 - +0.3
680,280 - +0.1
680,297 - +0.8
680,308 - +1.1
680,310 - -0.7
680,310 - +1.5
680,317 - +0.8
680,321 + +0.4
680,327 + -0.3
680,357 - +0.6
680,369 + +1.4
680,377 + +0.7
680,395 + -1.0
680,405 - +1.2
680,423 - +1.2
680,454 + +1.6
680,460 + +0.6
680,486 - +0.9
680,493 - -0.6
680,529 + +0.9

Or see this region's nucleotide sequence