Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1637

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10004 and 10005 are separated by 182 nucleotides10005 and 10006 are separated by 816 nucleotides mRNA_1636: 10004 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 772,019 to 773,712 10004 mRNA_1637: 10005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 773,895 to 775,574 10005 mRNA_1638: 10006 - K11807 WDTC1 WD and tetratricopeptide repeats protein 1, at 776,391 to 779,009 10006

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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772,944 - 10004 mRNA_1636 0.55 +0.3
773,061 + 10004 mRNA_1636 0.62 +0.4
773,346 + 10004 mRNA_1636 0.78 +2.2
773,359 - 10004 mRNA_1636 0.79 -0.4
773,375 - 10004 mRNA_1636 0.80 -0.5
773,737 - +0.8
773,812 - -0.1
773,978 - -2.0
773,978 + -0.1
774,123 - 10005 mRNA_1637 0.14 +1.1
774,233 - 10005 mRNA_1637 0.20 -0.5
774,366 + 10005 mRNA_1637 0.28 +1.2
774,419 + 10005 mRNA_1637 0.31 +0.6
774,744 + 10005 mRNA_1637 0.51 +0.3
774,782 - 10005 mRNA_1637 0.53 +0.5
775,008 + 10005 mRNA_1637 0.66 +0.6
775,013 + 10005 mRNA_1637 0.67 +1.2
775,074 + 10005 mRNA_1637 0.70 +0.8
775,268 - 10005 mRNA_1637 0.82 +0.0
775,358 - 10005 mRNA_1637 0.87 -0.5
775,464 - +1.3
775,467 - +0.5
775,482 + +0.9
775,631 + +0.7
775,764 - +0.5
776,049 - +2.2
776,083 - +1.0
776,161 - +0.5
776,524 - +0.3

Or see this region's nucleotide sequence