Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1655

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10023 and 10024 are separated by 121 nucleotides mRNA_1655: 10023 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 819,421 to 820,962 10023 mRNA_1656: 10024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 821,084 to 822,700 10024

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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818,515 + +1.5
818,519 + +0.4
818,550 + +1.2
818,645 - +2.0
818,812 - +1.3
818,820 + +0.1
818,824 + +3.6
819,076 - +2.8
819,090 + -0.4
819,108 + +0.0
819,232 - +0.8
819,250 + +1.0
819,253 - +0.4
819,254 - +0.4
819,263 - -0.8
819,385 + -0.1
819,397 - +0.3
819,408 - -0.1
819,419 + +0.5
819,686 - 10023 mRNA_1655 0.17 +1.6
819,734 + 10023 mRNA_1655 0.20 +1.4
819,866 - 10023 mRNA_1655 0.29 +0.4
820,282 + 10023 mRNA_1655 0.56 +0.1
820,577 - 10023 mRNA_1655 0.75 +0.5
820,706 - 10023 mRNA_1655 0.83 -0.4
820,713 + 10023 mRNA_1655 0.84 -0.4
820,718 - 10023 mRNA_1655 0.84 +0.2
820,720 - 10023 mRNA_1655 0.84 +0.9
820,861 - -2.0
820,862 + -1.2
821,020 + -0.4
821,031 + +2.2
821,036 + +1.9
821,038 - -0.1
821,040 + -0.0
821,047 + +0.1
821,191 - -1.1

Or see this region's nucleotide sequence