Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1729

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10096 and 10097 are separated by 472 nucleotides10097 and 10098 are separated by 331 nucleotides mRNA_1728: 10096 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 55,696 to 58,007 10096 mRNA_1729: 10097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 58,480 to 59,986 10097 mRNA_1730: 10098 - KOG4708 Mitochondrial ribosomal protein MRP17, at 60,318 to 61,237 10098

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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57,702 - 10096 mRNA_1728 0.87 -0.4
57,979 - +0.8
58,434 + -0.7
58,702 + 10097 mRNA_1729 0.15 -0.5
59,158 + 10097 mRNA_1729 0.45 +0.0
59,167 - 10097 mRNA_1729 0.46 -0.6
59,173 + 10097 mRNA_1729 0.46 +0.1
59,207 - 10097 mRNA_1729 0.48 -0.0
59,274 - 10097 mRNA_1729 0.53 +0.3
59,288 - 10097 mRNA_1729 0.54 +2.3
59,291 + 10097 mRNA_1729 0.54 +0.1
59,298 + 10097 mRNA_1729 0.54 -0.6
59,324 - 10097 mRNA_1729 0.56 +1.0
59,324 - 10097 mRNA_1729 0.56 +1.2
59,369 + 10097 mRNA_1729 0.59 -0.2
59,375 + 10097 mRNA_1729 0.59 -0.5
59,389 - 10097 mRNA_1729 0.60 +0.0
59,391 + 10097 mRNA_1729 0.60 -1.1
59,407 - 10097 mRNA_1729 0.62 -0.1
59,535 - 10097 mRNA_1729 0.70 -0.3
59,536 + 10097 mRNA_1729 0.70 -1.1
59,566 + 10097 mRNA_1729 0.72 +0.1
59,570 + 10097 mRNA_1729 0.72 +0.2
59,720 - 10097 mRNA_1729 0.82 +0.4
59,740 + 10097 mRNA_1729 0.84 -0.8
59,740 + 10097 mRNA_1729 0.84 +0.7
59,741 + 10097 mRNA_1729 0.84 +0.1
59,749 - 10097 mRNA_1729 0.84 -0.3
59,755 + 10097 mRNA_1729 0.85 -0.6
59,791 + 10097 mRNA_1729 0.87 -2.0
59,877 + +0.4
59,896 - +1.2
59,908 - +0.0
60,020 - -0.9
60,036 - +0.5
60,036 - -1.5
60,040 + +2.0
60,047 - -0.4
60,048 + -0.8
60,061 - +0.2
60,062 + -0.2
60,065 - +1.2
60,068 + +0.6
60,069 + +3.3
60,070 + +0.2
60,083 + +0.3
60,086 - -0.6
60,089 + +0.8
60,089 - -0.0
60,090 + +0.2
60,143 + +0.2
60,163 - +0.2
60,173 + -0.6
60,271 - -0.3

Or see this region's nucleotide sequence