Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1744

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10111 and 10112 are separated by 205 nucleotides10112 and 10113 are separated by 437 nucleotides mRNA_1743: 10111 - HMMPfam-Protein of unknown function DUF262-PF03235, at 96,619 to 100,637 10111 mRNA_1744: 10112 - Hypothetical Protein, at 100,843 to 102,379 10112 mRNA_1745: 10113 - K09829 ERG2 C-8 sterol isomerase, at 102,817 to 103,817 10113

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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99,937 - 10111 mRNA_1743 0.83 +2.4
100,106 + 10111 mRNA_1743 0.87 -0.4
100,213 + 10111 mRNA_1743 0.89 -0.4
100,373 - +1.0
100,381 - +2.7
100,519 - +2.1
100,630 - +0.1
100,656 + +0.2
100,668 + -0.3
100,696 + -0.5
100,748 + -0.4
100,819 - +0.5
101,177 - 10112 mRNA_1744 0.22 -0.5
101,182 + 10112 mRNA_1744 0.22 +1.8
101,749 - 10112 mRNA_1744 0.59 -0.7
101,889 - 10112 mRNA_1744 0.68 -0.0
101,895 - 10112 mRNA_1744 0.68 -1.2
101,916 + 10112 mRNA_1744 0.70 -0.1
101,937 + 10112 mRNA_1744 0.71 +0.5
102,041 - 10112 mRNA_1744 0.78 +1.9
102,052 + 10112 mRNA_1744 0.79 +1.2
102,062 - 10112 mRNA_1744 0.79 -0.5
102,079 + 10112 mRNA_1744 0.80 -1.5
102,172 - 10112 mRNA_1744 0.86 +0.3
102,391 + -0.8
102,474 + +1.8
102,476 - +0.5
102,563 - -1.4
102,588 - +0.1
102,639 - +0.6
102,644 - +0.0
102,649 + -0.4
102,651 + -0.6
102,652 - -0.8
102,794 + +1.7
102,815 + -0.1

Or see this region's nucleotide sequence