Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1794

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10160 and 10161 are separated by 63 nucleotides10161 and 10162 are separated by 98 nucleotides10162 and 10163 are separated by 182 nucleotides mRNA_1792: 10160 - Hypothetical Protein, at 214,724 to 215,217 10160 mRNA_1793: 10161 - K02867 RP-L11, MRPL11, rplK large subunit ribosomal protein L11, at 215,281 to 215,917 10161 mRNA_1794: 10162 - BLAST peroxisomal membrane anchor protein [Aspergillus ..., at 216,016 to 217,175 10162 mRNA_1795: 10163 - K12844 PRPF31 U4/U6 small nuclear ribonucleoprotein PRP31, at 217,358 to 219,404 10163

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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215,096 - 10160 mRNA_1792 0.75 +0.2
215,096 - 10160 mRNA_1792 0.75 -1.0
215,107 - 10160 mRNA_1792 0.78 +0.7
215,220 + +1.6
216,013 - +0.7
216,102 + +1.2
216,117 - +0.7
216,117 + +0.1
216,256 - 10162 mRNA_1794 0.21 +1.9
216,302 + 10162 mRNA_1794 0.25 +0.5
216,728 - 10162 mRNA_1794 0.61 -0.8
216,769 - 10162 mRNA_1794 0.65 +1.2
216,914 + 10162 mRNA_1794 0.77 +0.2
217,141 - +0.1
217,147 - -0.1

Or see this region's nucleotide sequence