Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1805

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10172 and 10173 are separated by 910 nucleotides10173 and 10174 are separated by 589 nucleotides mRNA_1804: 10172 - Hypothetical Protein, at 241,788 to 243,277 10172 mRNA_1805: 10173 - K00616 E2.2.1.2, talA, talB transaldolase, at 244,188 to 245,888 10173 mRNA_1806: 10174 - BLAST related to C2H2 zinc finger protein [Ustilago hordei], at 246,478 to 247,533 10174

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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243,476 - +0.6
243,476 - +2.3
243,595 - -0.2
244,039 + +1.6
245,950 - +1.2
246,034 + -0.1
246,063 - +0.6
246,068 - +0.3
246,069 + +1.4
246,092 + -0.9
246,094 + -0.1
246,094 + +0.4
246,097 - +1.7
246,098 + -0.4
246,101 - +0.8
246,103 + +0.8
246,110 + +0.3
246,228 + +1.8
246,379 - -2.6
246,396 + +1.3
246,522 - -0.1
246,644 - 10174 mRNA_1806 0.16 +1.1

Or see this region's nucleotide sequence