Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1813

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10180 and 10181 are separated by 970 nucleotides10181 and 10182 are separated by 561 nucleotides mRNA_1812: 10180 - Hypothetical Protein, at 265,152 to 268,202 10180 mRNA_1813: 10181 - K04352 RASA1, RASGAP Ras GTPase-activating protein 1, at 269,173 to 274,604 10181 mRNA_1814: 10182 - K00858 ppnK, NADK NAD+ kinase, at 275,166 to 278,698 10182

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
268,225 - +0.1
268,262 - -0.7
268,263 - +0.4
268,263 - +0.1
268,263 - -1.0
268,272 - +0.9
268,304 + +1.2
268,341 - +1.4
268,343 + +0.5
268,353 - -0.4
268,358 - +1.4
268,359 - +2.3
268,359 + +0.2
268,384 - +0.5
268,388 + -0.6
268,389 - +0.5
268,391 + +0.2
268,391 - +1.8
268,393 - +2.0
268,397 - +1.0
268,398 - +0.3
268,413 + -0.2
268,419 + +1.7
268,425 - +0.4
268,434 + -0.2
268,439 - +0.7
268,441 - +0.0
268,447 - -0.2
268,447 - +0.7
268,449 - -0.2
268,454 - +1.8
268,469 - -0.0
268,471 + -0.2
268,482 - -0.1
268,484 - +0.1
268,514 + +0.0
268,540 - -0.8
268,540 + -0.2
268,553 - -2.3
268,572 + +1.9
268,575 + -1.3
268,577 - +0.8
268,577 + +2.1
268,656 + +2.1
268,680 + -0.6
268,682 - +0.1
268,690 - +2.6
268,700 + +0.2
268,718 - -0.3
268,737 - +0.3
268,831 - +0.9
268,867 - +1.0
268,888 - -1.0
268,988 - +0.7
268,991 + +1.7
269,002 - +0.1
269,005 + -0.3
269,005 + +2.5
269,026 + +1.1
269,135 - +1.1
269,141 + +1.6
269,286 - +0.7
269,300 - +1.4
269,301 + +0.5
269,321 + +0.1
269,545 - +2.4
269,754 - 10181 mRNA_1813 0.11 +0.6
270,563 + 10181 mRNA_1813 0.26 -0.3
271,752 - 10181 mRNA_1813 0.47 -0.2
272,352 - 10181 mRNA_1813 0.59 +1.1
272,356 + 10181 mRNA_1813 0.59 +0.6
272,680 + 10181 mRNA_1813 0.65 +1.0
274,112 + -0.4
274,633 - +1.9
274,909 + +2.1
275,050 + -0.1
275,172 - +1.1
275,184 + -0.3
275,190 + -0.1
275,190 + +0.4
275,191 + -0.3
275,199 - +1.4
275,199 + -0.9
275,200 - +0.0
275,203 + +3.2
275,207 + -0.4
275,340 - -0.3
275,342 - +0.9
275,350 + -0.3
275,353 - -0.2
275,374 - -0.2
275,512 - +2.0
275,515 - +0.0
275,520 + 10182 mRNA_1814 0.10 +1.2

Or see this region's nucleotide sequence