Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1824

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10191 and 10192 are separated by 294 nucleotides10192 and 10193 are separated by 659 nucleotides mRNA_1823: 10191 - KOG3783 Uncharacterized conserved protein, at 298,528 to 301,287 10191 mRNA_1824: 10192 - Hypothetical Protein, at 301,582 to 303,988 10192 mRNA_1825: 10193 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 304,648 to 308,455 10193

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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300,864 + 10191 mRNA_1823 0.85 +2.4
300,926 - 10191 mRNA_1823 0.87 -0.3
301,161 + -0.2
301,201 + -0.2
301,314 + +0.9
301,325 - +2.1
301,336 - -0.1
301,475 - +1.1
301,485 + +0.3
301,503 - +1.3
301,504 - -0.0
301,505 + -0.8
301,510 - +1.8
301,608 - -1.6
301,649 - -2.2
301,665 + -0.4
301,682 + +1.5
302,762 + 10192 mRNA_1824 0.49 -0.1
302,824 + 10192 mRNA_1824 0.52 -0.6
302,958 + 10192 mRNA_1824 0.57 +1.0
302,985 - 10192 mRNA_1824 0.58 -0.3
303,092 - 10192 mRNA_1824 0.63 +0.2
303,169 - 10192 mRNA_1824 0.66 +1.3
303,384 + 10192 mRNA_1824 0.75 -1.6
303,612 - 10192 mRNA_1824 0.84 +0.4
303,973 - +0.8
304,091 + -0.3
304,129 - -0.1
304,163 + -1.0
304,242 + +1.2
304,246 + +0.6
304,262 - +2.0
304,270 - +0.6
304,282 - -0.6
304,411 + +0.5
304,415 - +1.2
304,429 + +0.6
304,565 - -1.2
304,585 + -0.2
304,881 + +0.0

Or see this region's nucleotide sequence