Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1992

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10359 and 10360 are separated by 385 nucleotides10360 and 10361 are separated by 954 nucleotides mRNA_1991: 10359 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 687,558 to 690,393 10359 mRNA_1992: 10360 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 690,779 to 693,096 10360 mRNA_1993: 10361 - Hypothetical Protein, at 694,051 to 694,539 10361

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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690,693 + +1.2
690,715 + -0.5
691,023 - 10360 mRNA_1992 0.11 +1.5
691,255 - 10360 mRNA_1992 0.21 +1.1
691,588 - 10360 mRNA_1992 0.35 +1.6
691,715 + 10360 mRNA_1992 0.40 -1.1
691,730 - 10360 mRNA_1992 0.41 +0.6
691,851 + 10360 mRNA_1992 0.46 +1.2
692,036 - 10360 mRNA_1992 0.54 +0.2
692,039 + 10360 mRNA_1992 0.54 -0.1
692,190 + 10360 mRNA_1992 0.61 +0.7
692,323 + 10360 mRNA_1992 0.67 -0.3
692,457 + 10360 mRNA_1992 0.72 +1.1
692,485 + 10360 mRNA_1992 0.74 +0.2
693,067 + +0.9
693,068 - -0.5
693,089 - +1.2
693,095 + +0.9
693,194 - -0.6
693,202 - +0.5
693,210 + -0.2
693,211 + +0.7
693,223 + -0.2
693,223 - -0.7
693,239 + +0.4
693,244 - +0.1
693,248 + +2.2
693,272 + -0.0
693,279 + +1.0
693,315 - +2.9
693,340 - -0.1
693,364 - +0.6
693,374 + -0.5
693,388 - +0.6
693,393 - +0.2
693,399 + -0.2
693,416 - +0.3
693,442 + +1.6
693,553 + +2.3
693,789 - +0.1
693,820 + +0.6
693,839 - +0.5
693,974 + -0.2
694,002 - +0.1

Or see this region's nucleotide sequence