Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2017

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10384 and 10385 are separated by 756 nucleotides10385 and 10386 are separated by 703 nucleotides mRNA_2016: 10384 - HMMPfam-Glycosyl transferase family group 2-PF13632,SUPERFAMILY--SSF53448, at 748,205 to 751,738 10384 mRNA_2017: 10385 - K12600 SKI3, TTC37 superkiller protein 3, at 752,495 to 757,859 10385 mRNA_2018: 10386 - K09554 CDC37 cell division cycle protein 37, at 758,563 to 760,344 10386

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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751,596 + +0.4
751,605 + -0.4
751,657 - +0.6
751,683 - +0.2
751,785 + -0.2
751,962 - -0.3
752,039 - +0.8
752,134 + -0.2
752,208 - +0.9
752,333 + +0.4
752,351 - -0.2
752,371 - +1.1
752,533 + -2.0
752,558 - -0.0
752,621 - -1.1
752,704 + -1.7
752,729 + +1.6
752,820 - -1.5
752,823 - -1.1
753,529 - 10385 mRNA_2017 0.19 -2.7
754,120 + 10385 mRNA_2017 0.30 +0.1
755,345 - 10385 mRNA_2017 0.53 +0.4
755,454 - 10385 mRNA_2017 0.55 -0.8
755,720 + 10385 mRNA_2017 0.60 -0.8
755,844 - 10385 mRNA_2017 0.62 -1.4
756,220 - 10385 mRNA_2017 0.69 -0.6
756,227 + 10385 mRNA_2017 0.70 -1.3
757,759 + -0.7
757,816 - -0.2
757,879 + +0.4
757,883 - -1.6
757,911 + +0.0
758,042 - +0.3
758,055 + -0.1
758,187 + +0.4
758,196 + +0.3
758,205 - +1.2
758,214 + +0.5
758,335 - -0.6

Or see this region's nucleotide sequence