Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2092

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10459 and 10460 are separated by 823 nucleotides10460 and 10461 are separated by 354 nucleotides mRNA_2091: 10459 - KOG0254 Predicted transporter (major facilitator superfamily), at 49,502 to 51,805 10459 mRNA_2092: 10460 - K20457 DHFS dihydrofolate synthase, at 52,629 to 54,149 10460 mRNA_2093: 10461 - K10967 KTR1_3 alpha 1,2-mannosyltransferase, at 54,504 to 56,604 10461

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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51,651 + -0.6
51,664 + -0.9
51,791 - +0.7
51,941 + +1.1
52,062 + +0.6
52,076 - +0.9
52,234 + +0.6
52,281 + +0.5
52,541 + +0.3
52,683 + -2.4
54,152 - -0.3
54,291 + +0.2
54,293 + -0.4
54,373 - +0.8
54,412 - +1.4
54,418 - +0.8
54,437 + +1.9
54,446 - -0.1
54,565 - +0.8
54,580 - -0.9
54,586 - +0.9
54,588 - +1.7
54,618 + +1.7
54,720 + 10461 mRNA_2093 0.10 +0.1
54,724 - 10461 mRNA_2093 0.10 +1.4
54,736 - 10461 mRNA_2093 0.11 -0.1
54,742 + 10461 mRNA_2093 0.11 +0.8
54,991 - 10461 mRNA_2093 0.23 +1.1
54,994 + 10461 mRNA_2093 0.23 -0.3
55,000 + 10461 mRNA_2093 0.24 -0.1

Or see this region's nucleotide sequence