Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2467

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_2467: 10835 - Hypothetical Protein, at 216,514 to 218,202 10835

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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215,542 - +1.6
215,638 - +1.0
215,662 + -0.3
215,668 - -0.6
216,081 + +0.7
216,117 - +1.9
216,141 - +0.3
216,168 + +1.5
216,282 - -0.3
216,293 + +1.7
216,297 + -0.1
216,298 + +1.3
216,302 - +0.9
216,403 - +0.5
216,409 - -0.2
216,446 + +0.9
216,450 + +0.1
216,543 + +1.3
216,562 - -0.7
216,564 - +0.1
216,595 - -1.0
217,721 + 10835 mRNA_2467 0.71 -0.3
217,727 + 10835 mRNA_2467 0.72 +1.1
217,998 + 10835 mRNA_2467 0.88 +0.3
218,001 + 10835 mRNA_2467 0.88 +0.2
218,037 - +2.9
218,120 - -1.3
218,130 + +0.2
218,133 - -0.6
218,137 - +0.5
218,160 + -1.4
218,198 + +0.8
218,261 + -1.0
218,280 + -1.0
218,282 + -0.8
218,287 + +1.0
218,288 - +0.5
218,289 + -1.0
218,295 + +0.3
218,302 + -0.6
218,306 - -0.2
218,306 - -0.4
218,308 + +0.1
218,340 - +0.4
218,343 - -1.9
218,343 + -0.2
218,344 - +0.5
218,350 - -1.7
218,361 - +0.5
218,367 - +0.6
218,392 + -1.1
218,427 - -0.1
218,456 + +0.5
218,482 - +0.1
218,506 + -2.0
218,507 - -0.8
218,561 + +1.1
218,561 + +2.0
218,570 + +2.1
218,573 + -0.1
218,594 + +0.3
218,609 - +1.1
218,642 - +0.2
218,651 + -0.3
218,657 - +0.4
218,659 + -0.0
218,671 - +1.7
218,677 - +1.4
218,747 - -0.6
218,766 - +0.8
218,788 - -0.1
218,794 - +1.6
218,802 + +0.4
218,817 - +0.5
218,830 + +0.9
218,924 - +0.4
218,926 + +0.3
218,947 - +0.4
218,951 - +1.8
218,952 - -0.6
218,954 - -1.1
218,961 - +0.2
218,962 - +0.1
218,969 + +1.0
219,087 - -0.5

Or see this region's nucleotide sequence