Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2540

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10907 and 10908 are separated by 197 nucleotides10908 and 10909 are separated by 457 nucleotides mRNA_2539: 10907 - Hypothetical Protein, at 396,094 to 398,437 10907 mRNA_2540: 10908 - SUPERFAMILY--SSF52058, at 398,635 to 399,613 10908 mRNA_2541: 10909 - HMMPfam-Hemerythrin HHE cation binding domain-PF01814, at 400,071 to 401,322 10909

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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397,658 + 10907 mRNA_2539 0.67 -0.1
397,921 + 10907 mRNA_2539 0.78 -0.3
397,927 + 10907 mRNA_2539 0.78 -0.5
398,070 + 10907 mRNA_2539 0.84 -1.5
398,075 - 10907 mRNA_2539 0.85 +0.6
398,288 + +2.8
398,364 + +0.1
398,406 - +0.3
398,515 + +0.6
398,515 + -0.0
398,618 + +2.4
398,635 - +0.6
398,792 + 10908 mRNA_2540 0.16 +0.2
398,798 - 10908 mRNA_2540 0.17 +0.9
398,846 - 10908 mRNA_2540 0.22 -0.3
398,867 - 10908 mRNA_2540 0.24 +1.5
398,908 - 10908 mRNA_2540 0.28 +1.8
398,949 - 10908 mRNA_2540 0.32 -3.2
399,077 - 10908 mRNA_2540 0.45 -0.1
399,265 - 10908 mRNA_2540 0.64 -0.0
399,380 - 10908 mRNA_2540 0.76 -0.4
399,434 + 10908 mRNA_2540 0.82 +2.6
399,680 - -1.0
399,681 + -0.6
399,704 + -0.2
399,808 - +1.7
399,918 + -1.0
399,975 - -0.3
400,205 + 10909 mRNA_2541 0.11 -1.8
400,264 + 10909 mRNA_2541 0.15 -0.4

Or see this region's nucleotide sequence