Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2573

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10940 and 10941 are separated by 196 nucleotides10941 and 10942 are separated by 130 nucleotides mRNA_2572: 10940 - K13093 HTATSF1 HIV Tat-specific factor 1, at 472,476 to 474,035 10940 mRNA_2573: 10941 - K03848 ALG6 alpha-1,3-glucosyltransferase, at 474,232 to 477,732 10941 mRNA_2574: 10942 - K10158 B3GAT3 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3, at 477,863 to 478,879 10942

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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474,079 - +0.1
474,204 - -1.7
474,360 - +0.0
474,374 - +0.7
474,386 - -0.9
474,392 + -0.4
474,668 - 10941 mRNA_2573 0.12 +1.3
474,788 + 10941 mRNA_2573 0.16 -0.6
474,791 - 10941 mRNA_2573 0.16 -0.1
474,808 + 10941 mRNA_2573 0.16 -0.7
474,820 - 10941 mRNA_2573 0.17 +0.0
474,836 + 10941 mRNA_2573 0.17 +1.8
474,965 - 10941 mRNA_2573 0.21 +0.6
474,982 + 10941 mRNA_2573 0.21 +0.7
474,983 + 10941 mRNA_2573 0.21 -2.2
475,118 - 10941 mRNA_2573 0.25 +0.4
475,124 + 10941 mRNA_2573 0.25 +1.2
475,135 + 10941 mRNA_2573 0.26 +0.6
475,137 - 10941 mRNA_2573 0.26 +0.4
475,139 + 10941 mRNA_2573 0.26 +0.4
475,139 - 10941 mRNA_2573 0.26 +0.6
475,150 + 10941 mRNA_2573 0.26 +0.4
475,178 + 10941 mRNA_2573 0.27 -0.4
475,253 - 10941 mRNA_2573 0.29 +0.6
475,270 + 10941 mRNA_2573 0.30 -1.0
475,271 + 10941 mRNA_2573 0.30 +0.3
475,287 + 10941 mRNA_2573 0.30 -0.2
475,417 + 10941 mRNA_2573 0.34 -1.3
475,558 + 10941 mRNA_2573 0.38 +1.4
475,723 + 10941 mRNA_2573 0.43 +0.2
475,861 + 10941 mRNA_2573 0.47 -0.1
476,123 - 10941 mRNA_2573 0.54 +0.7
476,194 + 10941 mRNA_2573 0.56 +2.3
476,430 + 10941 mRNA_2573 0.63 +0.0
476,448 - 10941 mRNA_2573 0.63 -0.0
476,460 + 10941 mRNA_2573 0.64 +0.2
476,478 + 10941 mRNA_2573 0.64 +0.6
476,652 + 10941 mRNA_2573 0.69 +0.5
476,925 + 10941 mRNA_2573 0.77 +0.8
477,467 - +0.2
477,479 + +1.0
477,770 - +0.4
477,793 + +1.9
477,795 + -0.3
477,795 + +3.3
477,810 - -0.5
477,881 - -1.0
477,939 + -0.4
477,966 - 10942 mRNA_2574 0.10 -0.0
478,008 + 10942 mRNA_2574 0.14 -0.5
478,075 - 10942 mRNA_2574 0.21 -1.0
478,231 + 10942 mRNA_2574 0.36 -2.1
478,239 - 10942 mRNA_2574 0.37 +0.1
478,243 + 10942 mRNA_2574 0.37 +0.2
478,243 - 10942 mRNA_2574 0.37 +1.7
478,360 + 10942 mRNA_2574 0.49 +2.6
478,396 + 10942 mRNA_2574 0.52 +2.2

Or see this region's nucleotide sequence