Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2597

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10964 and 10965 are separated by 449 nucleotides10965 and 10966 are separated by 899 nucleotides mRNA_2596: 10964 - K00966 GMPP mannose-1-phosphate guanylyltransferase, at 561,715 to 563,654 10964 mRNA_2597: 10965 - Hypothetical Protein, at 564,104 to 565,284 10965 mRNA_2598: 10966 - Hypothetical Protein, at 566,184 to 566,984 10966

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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563,297 + 10964 mRNA_2596 0.82 +0.0
563,423 - 10964 mRNA_2596 0.88 +1.5
563,572 + +0.8
563,718 - +0.0
563,736 - +0.9
563,758 + -0.1
563,821 + +0.8
563,861 + -0.8
563,866 - +0.3
563,894 - +1.8
563,894 - +0.4
563,904 + -0.5
563,915 - -0.0
563,953 - +2.1
563,991 - -0.5
564,023 + +0.1
564,037 - +0.1
564,042 - -0.5
564,064 + +1.7
564,108 + +1.5
564,200 - -0.7
564,208 - +0.2
564,209 - +1.6
564,288 - 10965 mRNA_2597 0.16 +0.6
564,351 - 10965 mRNA_2597 0.21 +0.2
564,355 - 10965 mRNA_2597 0.21 +1.0
564,357 + 10965 mRNA_2597 0.21 -0.6
564,402 - 10965 mRNA_2597 0.25 +0.1
564,481 + 10965 mRNA_2597 0.32 -0.1
564,508 + 10965 mRNA_2597 0.34 -0.9
564,780 - 10965 mRNA_2597 0.57 +0.1
565,072 - 10965 mRNA_2597 0.82 -0.5
565,099 - 10965 mRNA_2597 0.84 -0.1
565,106 - 10965 mRNA_2597 0.85 -1.7
565,226 + -0.5
565,290 - -0.4
565,374 + -0.7
565,408 + +1.0
565,572 + +0.2
565,804 + +0.6
565,918 - -0.1
566,036 - -0.1
566,042 - -0.9
566,047 - -0.0
566,073 - +0.3
566,076 - +0.3
566,077 - -0.4
566,084 + -0.0
566,085 - -0.3
566,086 + -0.8
566,096 + +1.0
566,100 - +0.2
566,100 - -0.8
566,100 - +0.6
566,102 + +1.1
566,103 + +0.0
566,103 + -0.5
566,116 - +3.4
566,117 - +0.6
566,120 + +0.7
566,126 - +1.1
566,128 - -0.8
566,130 + +0.2
566,132 - -0.8
566,135 + +0.1
566,137 - +1.6
566,146 + +1.3
566,147 + -0.5
566,148 - -1.4
566,157 + +0.3
566,258 + +0.1
566,272 - 10966 mRNA_2598 0.11 +0.3
566,278 + 10966 mRNA_2598 0.12 +0.1

Or see this region's nucleotide sequence