Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2640

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11007 and 11008 are separated by 920 nucleotides11008 and 11009 are separated by 282 nucleotides mRNA_2639: 11007 - HMMPfam-Glycosyl hydrolase family 26-PF02156,SUPERFAMILY--SSF51445, at 654,513 to 656,042 11007 mRNA_2640: 11008 - Hypothetical Protein, at 656,963 to 657,920 11008 mRNA_2641: 11009 - Hypothetical Protein, at 658,203 to 659,346 11009

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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655,990 - +0.9
656,142 + +1.1
656,158 + +0.4
656,161 + +0.3
656,328 + +0.0
656,329 - +0.8
656,461 + +0.0
656,573 - -1.0
656,596 + +0.2
656,606 - +0.4
656,769 - +1.8
656,882 + +1.1
657,163 + 11008 mRNA_2640 0.21 +0.6
657,202 - 11008 mRNA_2640 0.25 -0.6
657,202 + 11008 mRNA_2640 0.25 +0.3
657,462 - 11008 mRNA_2640 0.52 -0.1
657,487 + 11008 mRNA_2640 0.55 +0.6
657,500 - 11008 mRNA_2640 0.56 -2.1
657,534 - 11008 mRNA_2640 0.60 +2.5
657,537 - 11008 mRNA_2640 0.60 -0.4
657,537 - 11008 mRNA_2640 0.60 +0.3
657,559 - 11008 mRNA_2640 0.62 +1.7
657,563 + 11008 mRNA_2640 0.63 +0.2
657,569 - 11008 mRNA_2640 0.63 -0.6
657,570 + 11008 mRNA_2640 0.63 -0.0
657,609 - 11008 mRNA_2640 0.67 +0.5
657,615 + 11008 mRNA_2640 0.68 +0.0
657,619 + 11008 mRNA_2640 0.68 -0.3
657,619 + 11008 mRNA_2640 0.68 +0.1
657,620 - 11008 mRNA_2640 0.69 +1.5
657,636 - 11008 mRNA_2640 0.70 +0.3
657,638 + 11008 mRNA_2640 0.70 +0.5
657,645 + 11008 mRNA_2640 0.71 -0.1
657,682 - 11008 mRNA_2640 0.75 -0.2
657,691 - 11008 mRNA_2640 0.76 +0.4
657,778 - 11008 mRNA_2640 0.85 +0.5
657,787 + 11008 mRNA_2640 0.86 +0.0
657,811 + 11008 mRNA_2640 0.89 -0.0
657,812 - 11008 mRNA_2640 0.89 -0.1
657,820 - 11008 mRNA_2640 0.89 -0.0
657,832 + +1.2
657,832 + +0.6
657,857 - +0.0
657,882 - -0.0
657,883 - +0.4
657,886 - +2.5
657,898 + -0.7
657,910 - +0.6
657,914 - -0.2
657,920 - +1.1
657,920 + -1.4
657,934 - -0.4
657,939 - +0.1
657,942 + -0.2
657,953 - +0.8
657,954 + +1.5
657,975 + -0.2
657,975 - -1.0
657,995 + +0.3
657,997 - -1.4
657,997 - +0.9
657,998 - +0.8
658,000 + +0.3
658,003 - +1.1
658,008 - -0.3
658,009 - +0.2
658,018 - -0.2
658,019 - -0.2
658,020 - +1.1
658,022 - +0.3
658,043 + +2.0
658,056 - +1.9
658,130 - -0.1
658,156 - +1.1
658,161 - +0.4
658,166 + +0.5
658,192 + -0.8
658,206 - -0.7
658,287 - +2.6
658,298 - +0.6
658,309 + +0.5
658,377 - 11009 mRNA_2641 0.15 +0.9
658,433 + 11009 mRNA_2641 0.20 +0.2
658,633 + 11009 mRNA_2641 0.38 +0.3
658,645 + 11009 mRNA_2641 0.39 -0.5
658,769 - 11009 mRNA_2641 0.49 +0.9

Or see this region's nucleotide sequence