Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2667

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11034 and 11035 are separated by 593 nucleotides11035 and 11036 are separated by 109 nucleotides mRNA_2666: 11034 - HMMPfam-Lipase (class 3)-PF01764,SUPERFAMILY--SSF53474, at 715,009 to 717,266 11034 mRNA_2667: 11035 - K05535 MNN2 alpha 1,2-mannosyltransferase, at 717,860 to 720,887 11035 mRNA_2668: 11036 - K00049 GRHPR glyoxylate/hydroxypyruvate reductase, at 720,997 to 722,358 11036

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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716,894 - 11034 mRNA_2666 0.83 +0.4
716,924 - 11034 mRNA_2666 0.85 -0.4
716,953 - 11034 mRNA_2666 0.86 +0.7
717,048 - -0.4
717,069 + -0.4
717,107 - +0.4
717,216 + -0.1
717,226 - +2.0
717,229 - -1.2
717,230 + +1.1
717,231 - +0.3
717,243 - +0.4
717,243 - +2.1
717,245 - +0.3
717,245 - +0.3
717,248 + +0.8
717,248 - +2.1
717,250 - +0.6
717,251 + +0.8
717,253 + +0.3
717,258 + -0.4
717,268 - -0.4
717,272 + +0.7
717,275 - -1.2
717,279 + -0.3
717,279 + +0.5
717,279 + +1.7
717,303 + +0.9
717,326 + +0.3
717,354 + +0.9
717,426 + +0.9
717,438 - +1.6
717,443 + +1.9
717,447 + -0.5
717,448 - +0.1
717,449 + +0.5
717,456 - +0.2
717,456 - -0.6
717,456 - +0.4
717,466 + -0.1
717,595 - -0.3
717,597 - +0.9
717,622 + +0.2
717,633 + +0.8
717,645 - -1.3
717,649 - +0.1
717,656 + +0.9
717,668 - -0.9
717,791 + -0.4
717,798 - -0.6
717,807 + +0.5
717,809 + -0.7
717,915 + -0.2
718,111 + +2.2
718,226 - 11035 mRNA_2667 0.12 +1.7
718,370 - 11035 mRNA_2667 0.17 +2.0
718,466 - 11035 mRNA_2667 0.20 -0.4
718,509 + 11035 mRNA_2667 0.21 -0.3
718,688 - 11035 mRNA_2667 0.27 -0.0
718,693 + 11035 mRNA_2667 0.28 +1.0
719,239 - 11035 mRNA_2667 0.46 +1.9
719,342 + 11035 mRNA_2667 0.49 +0.2
720,083 + 11035 mRNA_2667 0.73 -0.3
720,145 - 11035 mRNA_2667 0.75 +0.7
720,168 - 11035 mRNA_2667 0.76 +0.6
720,462 + 11035 mRNA_2667 0.86 -0.6
720,574 - 11035 mRNA_2667 0.90 +0.3
720,883 - +0.8
720,908 - +0.1
720,909 + -0.1
720,938 - +1.2
721,029 - +2.9
721,050 + -0.2
721,393 + 11036 mRNA_2668 0.29 +0.6
721,509 + 11036 mRNA_2668 0.38 +0.9
721,556 + 11036 mRNA_2668 0.41 +2.1
721,691 - 11036 mRNA_2668 0.51 +0.8
721,694 + 11036 mRNA_2668 0.51 -0.4

Or see this region's nucleotide sequence