Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2781

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11148 and 11149 are separated by 173 nucleotides mRNA_2780: 11148 - KOG0546 HSP90 co-chaperone CPR7/Cyclophilin, at 194,102 to 194,966 11148 mRNA_2781: 11149 - K09506 DNAJA5 DnaJ homolog subfamily A member 5, at 195,140 to 197,521 11149

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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194,369 - 11148 mRNA_2780 0.31 +0.5
194,482 - 11148 mRNA_2780 0.44 +2.2
194,582 - 11148 mRNA_2780 0.55 +0.4
194,599 + 11148 mRNA_2780 0.57 -0.5
194,602 - 11148 mRNA_2780 0.58 +0.1
194,770 - 11148 mRNA_2780 0.77 +0.7
194,880 + +1.1
194,919 - -2.3
194,924 - +0.9
194,925 + +0.7
194,926 + -0.4
195,071 + -1.0
195,200 - +2.0
195,228 + +0.6
195,345 + +0.1
195,661 - 11149 mRNA_2781 0.22 +0.8
195,759 - 11149 mRNA_2781 0.26 +1.2
195,810 + 11149 mRNA_2781 0.28 +0.6
195,852 - 11149 mRNA_2781 0.30 +1.6
195,891 + 11149 mRNA_2781 0.32 +3.5
196,381 - 11149 mRNA_2781 0.52 -1.1
196,624 + 11149 mRNA_2781 0.62 -0.3
196,652 + 11149 mRNA_2781 0.63 -1.4
196,949 + 11149 mRNA_2781 0.76 -0.4
197,083 + 11149 mRNA_2781 0.82 -0.3
197,086 - 11149 mRNA_2781 0.82 +0.6
197,397 - -0.1
197,514 - +2.7
197,547 - -0.6
197,553 - +1.0
197,581 + -0.6
197,609 - -0.1
197,660 - -0.2
197,676 + +2.0
197,679 + +0.0
197,687 - -0.6
197,702 + -0.4
197,721 - -0.2
197,721 + +2.0
197,746 - -0.6
197,823 + +0.8
197,828 - +1.8
197,960 - +0.1
197,971 - +0.9
197,975 - +0.1
197,976 - -0.1
197,982 + -0.0
197,986 - +0.4
197,988 - +0.8
197,990 - +0.4
198,009 + +2.5
198,010 + -0.5
198,019 - -1.2
198,023 + +0.9
198,025 - +0.6
198,139 + +0.2
198,151 + +0.8
198,159 - -0.9
198,306 - +0.2
198,310 - -0.6
198,321 + +0.3
198,331 - +0.8
198,337 + -0.2
198,468 + -0.9
198,491 + +1.1
198,510 + +0.2

Or see this region's nucleotide sequence