Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2951

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11318 and 11319 are separated by 485 nucleotides11319 and 11320 are separated by 555 nucleotides mRNA_2950: 11318 - SUPERFAMILY--SSF56112, at 633,038 to 634,414 11318 mRNA_2951: 11319 - Hypothetical Protein, at 634,900 to 635,986 11319 mRNA_2952: 11320 - Hypothetical Protein, at 636,542 to 638,719 11320

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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633,985 - 11318 mRNA_2950 0.69 +0.3
633,985 - 11318 mRNA_2950 0.69 +0.6
634,116 + 11318 mRNA_2950 0.78 +0.1
634,229 + 11318 mRNA_2950 0.86 +0.7
634,250 + 11318 mRNA_2950 0.88 -0.3
634,401 + +0.3
634,419 - +1.7
634,843 + -0.0
634,945 - +0.6
635,036 + 11319 mRNA_2951 0.13 -0.3
635,154 + 11319 mRNA_2951 0.23 -0.2
635,204 + 11319 mRNA_2951 0.28 -0.0
635,264 - 11319 mRNA_2951 0.33 -0.5
635,714 + 11319 mRNA_2951 0.75 -0.3
635,719 + 11319 mRNA_2951 0.75 +1.7
635,740 - 11319 mRNA_2951 0.77 +2.5
635,874 - 11319 mRNA_2951 0.90 -0.8
636,149 + +1.4
636,168 + +0.7
636,183 - +0.8
636,230 - -0.9
636,309 + -0.0
636,321 - -0.6
636,327 + -0.7
636,668 - +0.7
636,762 - 11320 mRNA_2952 0.10 -0.2
636,771 - 11320 mRNA_2952 0.11 +0.6
636,772 - 11320 mRNA_2952 0.11 -1.8

Or see this region's nucleotide sequence