Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2956

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11323 and 11324 are separated by 136 nucleotides11324 and 11325 are separated by 454 nucleotides mRNA_2955: 11323 - Hypothetical Protein, at 642,849 to 643,772 11323 mRNA_2956: 11324 - Hypothetical Protein, at 643,909 to 644,877 11324 mRNA_2957: 11325 - Hypothetical Protein, at 645,332 to 646,636 11325

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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643,099 + 11323 mRNA_2955 0.27 +0.0
643,261 + 11323 mRNA_2955 0.45 -0.6
643,267 - 11323 mRNA_2955 0.45 -0.4
643,532 - 11323 mRNA_2955 0.74 +1.1
643,545 - 11323 mRNA_2955 0.75 +0.5
643,560 - 11323 mRNA_2955 0.77 -0.2
643,579 + 11323 mRNA_2955 0.79 -0.1
643,580 - 11323 mRNA_2955 0.79 +1.5
643,589 - 11323 mRNA_2955 0.80 +0.3
643,618 - 11323 mRNA_2955 0.83 +0.4
643,646 + 11323 mRNA_2955 0.86 +0.7
643,647 - 11323 mRNA_2955 0.86 +0.6
643,658 - 11323 mRNA_2955 0.88 -0.5
643,662 - 11323 mRNA_2955 0.88 +0.0
643,663 + 11323 mRNA_2955 0.88 +0.3
643,672 - 11323 mRNA_2955 0.89 +0.0
643,679 + 11323 mRNA_2955 0.90 -1.1
643,684 - -1.1
643,690 - +0.8
643,693 - -0.0
643,709 - +1.2
643,710 - +0.1
643,716 + +0.4
643,718 + +1.1
643,757 + -0.4
643,759 + +0.8
643,763 - +0.4
643,763 - +0.1
643,763 + -0.9
643,770 - -1.0
643,770 - +1.9
643,778 - +1.0
643,783 + +1.5
643,786 - -1.2
643,791 + +1.8
643,793 + +0.6
643,801 + -0.1
643,892 - -1.2
643,898 + -0.4
643,898 - -0.7
643,912 - +1.5
643,917 - -0.1
643,988 - -0.5
644,033 - 11324 mRNA_2956 0.13 +1.2
644,036 + 11324 mRNA_2956 0.13 -0.5
644,046 - 11324 mRNA_2956 0.14 +0.8
644,050 - 11324 mRNA_2956 0.15 +0.3
644,055 + 11324 mRNA_2956 0.15 -0.4
644,073 - 11324 mRNA_2956 0.17 +0.1
644,076 + 11324 mRNA_2956 0.17 -0.2
644,078 - 11324 mRNA_2956 0.17 +0.2
644,079 - 11324 mRNA_2956 0.18 -0.1
644,081 - 11324 mRNA_2956 0.18 -0.2
644,084 - 11324 mRNA_2956 0.18 -1.6
644,091 + 11324 mRNA_2956 0.19 +0.2
644,091 - 11324 mRNA_2956 0.19 +1.0
644,103 + 11324 mRNA_2956 0.20 +0.7
644,104 - 11324 mRNA_2956 0.20 +0.4
644,109 + 11324 mRNA_2956 0.21 +0.9
644,112 + 11324 mRNA_2956 0.21 +1.7
644,117 + 11324 mRNA_2956 0.21 -0.1
644,121 + 11324 mRNA_2956 0.22 +1.9
644,131 - 11324 mRNA_2956 0.23 +1.1
644,132 + 11324 mRNA_2956 0.23 +2.2
644,134 + 11324 mRNA_2956 0.23 +0.4
644,277 - 11324 mRNA_2956 0.38 +0.4
644,289 - 11324 mRNA_2956 0.39 +1.3
644,305 - 11324 mRNA_2956 0.41 +1.0
644,472 - 11324 mRNA_2956 0.58 +0.8
644,556 + 11324 mRNA_2956 0.67 +2.0
644,582 + 11324 mRNA_2956 0.69 -0.7
644,697 - 11324 mRNA_2956 0.81 -0.4
644,724 - 11324 mRNA_2956 0.84 +0.7
644,732 + 11324 mRNA_2956 0.85 -0.4
644,845 - +0.2
644,868 + -0.1
645,174 - +0.2
645,584 - 11325 mRNA_2957 0.19 +0.3
645,794 - 11325 mRNA_2957 0.35 -0.1
645,877 + 11325 mRNA_2957 0.42 +0.8

Or see this region's nucleotide sequence