Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3135

Experiment: YNB Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11502 and 11503 are separated by 669 nucleotides mRNA_3134: 11502 - K17278 PGRMC1_2 membrane-associated progesterone receptor component, at 397,818 to 398,852 11502 mRNA_3135: 11503 - HMMPfam-Alpha/beta hydrolase family-PF12695,SUPERFAMILY--SSF53474, at 399,522 to 400,301 11503

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
remove
398,594 + 11502 mRNA_3134 0.75 -1.0
398,598 + 11502 mRNA_3134 0.75 -0.1
398,601 + 11502 mRNA_3134 0.76 +2.4
398,606 - 11502 mRNA_3134 0.76 +0.1
398,607 + 11502 mRNA_3134 0.76 -0.8
398,607 + 11502 mRNA_3134 0.76 +0.6
398,729 - 11502 mRNA_3134 0.88 +1.3
398,734 - 11502 mRNA_3134 0.89 -0.4
398,749 - -0.6
398,760 + +1.0
398,760 - +0.7
398,774 - -0.1
398,843 - +1.0
398,879 + +0.2
398,889 - +1.4
398,897 + +1.2
398,907 + +1.8
398,910 + -0.0
398,913 + +0.9
398,942 + +0.1
399,008 - -2.5
399,042 - -0.3
399,043 + +0.2
399,057 + +0.1
399,065 + +0.6
399,083 - +0.8
399,160 - +0.9
399,191 - +0.9
399,230 + +0.6
399,268 - -0.6
399,324 + +0.3
399,365 + +0.8
399,370 + +0.1
399,475 - +1.5
399,663 - 11503 mRNA_3135 0.18 +0.8
399,730 - 11503 mRNA_3135 0.27 +0.8
399,939 - 11503 mRNA_3135 0.53 +1.7
400,194 - 11503 mRNA_3135 0.86 +0.4
400,197 + 11503 mRNA_3135 0.87 -0.8
400,206 - 11503 mRNA_3135 0.88 +1.5
400,250 - +2.3
400,405 - +0.8
400,407 + -0.8
400,526 + +1.2
400,526 + -0.8
400,526 - +0.4
400,643 + +1.0
400,852 + +0.8
400,855 - +0.3
400,912 + +1.9
400,946 + +1.5
400,964 + +0.8
401,094 - +0.2
401,098 + -0.6
401,215 - +0.9
401,227 - +0.1
401,227 - -0.1
401,235 + -0.3
401,251 + +0.3
401,258 + +0.4
401,259 + -1.3

Or see this region's nucleotide sequence