Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3160

Experiment: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11527 and 11528 are separated by 795 nucleotides11528 and 11529 are separated by 243 nucleotides mRNA_3159: 11527 - K15437 AIMP1, ARC1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1, at 452,393 to 454,134 11527 mRNA_3160: 11528 - Hypothetical Protein, at 454,930 to 455,731 11528 mRNA_3161: 11529 - SUPERFAMILY--SSF49899, at 455,975 to 458,012 11529

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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453,964 - -0.3
453,965 - -0.8
453,971 - +0.6
454,003 - -0.2
454,018 - +0.7
454,022 + +1.2
454,023 - -0.7
454,049 + -0.1
454,057 - +0.8
454,060 - +0.8
454,060 - +1.5
454,063 + +0.1
454,065 - -1.9
454,068 + +0.2
454,078 + +0.4
454,089 + -1.0
454,102 + -0.8
454,129 - -0.3
454,139 - +0.2
454,148 - +1.0
454,180 - +0.5
454,184 - +1.0
454,216 - +0.8
454,218 - +1.2
454,220 - -0.6
454,234 + +1.7
454,240 + +0.2
454,240 - +0.5
454,245 + +0.1
454,246 + +1.2
454,253 - +0.6
454,259 - -0.0
454,274 + -0.3
454,275 + +0.4
454,278 + -1.0
454,283 + +0.3
454,304 - +0.3
454,348 - -0.2
454,362 - +0.6
454,380 + +1.1
454,393 - +1.0
454,470 - +0.2
454,477 - +0.0
454,503 - +1.8
454,507 - +0.0
454,552 - +0.1
454,552 + +0.8
454,566 + -0.3
454,570 + -0.1
454,601 + +1.4
454,606 + +0.1
454,611 - -0.1
454,627 + +0.7
454,639 + +0.8
454,641 + -0.9
454,642 + +0.7
454,642 - -0.4
454,642 - +1.4
454,643 - +0.1
454,655 - -0.6
454,659 + +0.2
454,661 - -0.6
454,662 - +1.5
454,677 + -0.6
454,677 + +0.7
454,678 - +1.9
454,679 + -1.0
454,680 - +0.4
454,681 + -0.2
454,694 - -0.5
454,694 - -0.2
454,696 - +1.3
454,707 - +0.7
454,709 - -0.7
454,713 - +1.1
454,717 - +2.1

Or see this region's nucleotide sequence